PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010519931.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family CPP
Protein Properties Length: 856aa    MW: 93298.9 Da    PI: 5.9818
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010519931.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR52.31.1e-16499538342
             TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                     +k+CnCkk+kClk+YC+Cfaag++C+e+C C++C Nk e+
  XP_010519931.1 499 NKRCNCKKTKCLKLYCDCFAAGVYCDESCACQGCLNKPEH 538
                     799*********************************9876 PP
2TCR49.77.2e-16585623139
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                     ++k+gCnCkks ClkkYCeC++ g+ Cs+ C+Ce+CkN 
  XP_010519931.1 585 RHKRGCNCKKSMCLKKYCECYQGGVGCSSGCRCENCKNI 623
                     589***********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.0E-14497538IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.22498625IPR005172CRC domain
PfamPF036381.8E-12500535IPR005172CRC domain
SMARTSM011142.4E-16585626IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.1E-11587622IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 856 aa     Download sequence    Send to blast
MDSPESSTAK VNPDVNTDAA VNVSRSLNSP SVQESPFSHF VSTFSPLTLG DSSRSSHVFL  60
GLNSPPAIFT TPRANPVHES GLVISDGNTQ ASNEEEKKEK GNENQDKEPR DCVNWDKPAI  120
DLDACLANDS RATATDNDDQ VQSSGSSECV DRYLADNAEE KSTWLDHTVD QKLKHIRQVL  180
EISPSNADTA TCSSLNVMAD YEKEMLTKGL IEEDAKGKGV LGGGQGTGRE EVTNGEGKCK  240
YCSKELHDQC KCLYSQSEKV GCEEERKFPS EIPSEHMQTV QSLEDPNNNV ESLLSKPNDI  300
VVLESEGNQQ RGMSRRCLQF EEAQPKANSN TNSSLAMTAF LRPVSAPSES DPFDSSTSSC  360
SRHLTDTSPT VTDVPCSATN IKQIAPASKP LGIGVHLNSI IKTVPFHHDG NASLKPSDRS  420
MSVLEIRSKV IADTSPPQIT NDEFLQDPED FMSLQIIDDL ATPGDKRKFV PENPDHFEQH  480
SQLSPKKKKL SSSPDDDGNK RCNCKKTKCL KLYCDCFAAG VYCDESCACQ GCLNKPEHAE  540
TVLQTRQQIE SRNPLAFAPK IIQSGSDFSM SNMETGTLTT PASARHKRGC NCKKSMCLKK  600
YCECYQGGVG CSSGCRCENC KNIYGKKDEF LSSREITERP EPDRRMDLAV ARKSSLQAET  660
YHMHKLTPVT PSLQHSDRGK VAPKSQIIIR RCNHPPDSDP RSLRHSDGTD PNPEASVEAT  720
ETSSYNHKTS QNSPEMAGFG PVTTNPLPTP TGCSSTSLCT SPTFGSGSGV FNVREDGYTH  780
EILTDASMAI KPVKVCSPSR KRVSPPRSCL SQAGSSSSVP LRSGRKFILK ALPPFPPLTP  840
CVENKSITPE DNPQPE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-1650262314121Protein lin-54 homolog
5fd3_B2e-1650262314121Protein lin-54 homolog
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010519931.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010519931.10.0PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X1
RefseqXP_010519932.10.0PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X1
RefseqXP_019056366.10.0PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X1
STRINGXP_010519931.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151961015
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.13e-57Tesmin/TSO1-like CXC domain-containing protein