PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010519303.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | B3 | ||||||||
Protein Properties | Length: 260aa MW: 29956.3 Da PI: 10.2625 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.8 | 3e-16 | 129 | 218 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k +++s+v+ +l lp +f+++h ++++ ++tl de+g+++ k+ +k++ l++GW++F +gL +gD ++F+l+ ++f +v XP_010519303.1 129 FVKPMLQSHVTGGFWLGLPLRFCKAHL--PKCDEMVTLVDEEGEEFPTKYLAEKNG----LSGGWRGFSINHGLVDGDALLFQLVAPTKF--KVY 215 89************************6..34888****************666666....***********************9987777..777 PP EE- CS B3 96 vfr 98 ++r XP_010519303.1 216 IIR 218 776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-19 | 121 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.3E-24 | 122 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.19E-28 | 127 | 218 | No hit | No description |
PROSITE profile | PS50863 | 11.66 | 129 | 220 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.5E-21 | 129 | 220 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.0E-15 | 129 | 218 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MEESELNYEQ LRLKRLEENK KRMEELNLNK LAQALRGSSS LKPSPMKRGK PRALRQPVDS 60 SAVRRSSRMA LKPAPNYTEL GLELLHRPRR TYRRRDLLNR KYASDEERAY AIDRVKKLQS 120 NLEPEFPSFV KPMLQSHVTG GFWLGLPLRF CKAHLPKCDE MVTLVDEEGE EFPTKYLAEK 180 NGLSGGWRGF SINHGLVDGD ALLFQLVAPT KFKVYIIRVY NDDDFCANGG DKENESENGT 240 ETKELKGTAK RKRRGRGRRM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010519303.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010519303.1 | 0.0 | PREDICTED: B3 domain-containing protein At3g19184 isoform X2 | ||||
Swissprot | Q1G3M3 | 1e-100 | Y3918_ARATH; B3 domain-containing protein At3g19184 | ||||
TrEMBL | A0A061E0U4 | 1e-111 | A0A061E0U4_THECC; AP2/B3-like transcriptional factor family protein, putative | ||||
STRING | XP_010519302.1 | 1e-165 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 1e-94 | B3 family protein |
Publications ? help Back to Top | |||
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