PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010519302.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Protein Properties

Length: 313aa MW: 35858.9 Da PI: 9.8573

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010519302.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.3	4.3e-16	182	271	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k +++s+v+ +l lp +f+++h ++++ ++tl de+g+++ k+ +k++ l++GW++F +gL +gD ++F+l+ ++f +v XP_010519302.1 182 FVKPMLQSHVTGGFWLGLPLRFCKAHL--PKCDEMVTLVDEEGEEFPTKYLAEKNG----LSGGWRGFSINHGLVDGDALLFQLVAPTKF--KVY 268 89**********************6..34888************666666....*********************9987777..777 PP EE- CS B3 96 vfr 98 ++r XP_010519302.1 269 IIR 271 776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.7E-19	174	271	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.65E-24	175	271	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.73E-27	180	271	No hit	No description
Pfam	PF02362	1.0E-14	182	271	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.66	182	273	IPR003340	B3 DNA binding domain
SMART	SM01019	3.5E-21	182	273	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MEESELNYEQ LRLKRLEENK KRMEELNLNK LAQALRGSSS LKPSPMKRGK PRALRQPVDS 60 SAVRRSSRMA LKPAPNYTEK QVNRNVSALF SSFEEDFGTS TEVSTYAYQN LLSLGQWVLN 120 PDLSCIGCLF VKLGLELLHR PRRTYRRRDL LNRKYASDEE RAYAIDRVKK LQSNLEPEFP 180 SFVKPMLQSH VTGGFWLGLP LRFCKAHLPK CDEMVTLVDE EGEEFPTKYL AEKNGLSGGW 240 RGFSINHGLV DGDALLFQLV APTKFKVYII RVYNDDDFCA NGGDKENESE NGTETKELKG 300 TAKRKRRGRG RRM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010519302.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010519302.1	0.0	PREDICTED: B3 domain-containing protein At3g19184 isoform X1
Swissprot	Q1G3M3	8e-69	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A061E0U4	1e-101	A0A061E0U4_THECC; AP2/B3-like transcriptional factor family protein, putative
STRING	XP_010519302.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3744	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	4e-64	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]