PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010518926.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 194aa MW: 21307.7 Da PI: 11.2245 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 177.8 | 1.5e-54 | 111 | 194 | 218 | 301 |
GAGA_bind 218 alrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 ++r+CYkWG GGWqS+CCt+ iSvyPLP+s++r+ +R+agrKmS+ga+ klL +La+eG+dls pvDLk+hWA+HGtnkfvti+ XP_010518926.1 111 IPRVCYKWGLGGWQSSCCTIGISVYPLPMSSTRPRSRLAGRKMSNGAYVKLLLRLAGEGHDLSRPVDLKNHWARHGTNKFVTIK 194 689********************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 2.3E-42 | 1 | 194 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 4.7E-48 | 112 | 194 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MSSYPHQNRL GPEAHTREGA GMAGSDIPIP RTVGIDLSQL THVNTAAESF VVSPPVRDTR 60 NDTKHAKPVK EKSATQKSPS KALKPKTPRK NPSAMPKKPK KTSSVPEVKR IPRVCYKWGL 120 GGWQSSCCTI GISVYPLPMS STRPRSRLAG RKMSNGAYVK LLLRLAGEGH DLSRPVDLKN 180 HWARHGTNKF VTIK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010518926.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019056261.1 | 1e-141 | PREDICTED: protein BASIC PENTACYSTEINE7-like isoform X2 | ||||
Swissprot | O82286 | 8e-69 | BPC7_ARATH; Protein BASIC PENTACYSTEINE7 | ||||
TrEMBL | A7UN68 | 1e-69 | A7UN68_ARAAE; GAGA-binding transcriptional activator (Fragment) | ||||
STRING | XP_010518926.1 | 1e-141 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13674 | 21 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35550.4 | 4e-71 | basic pentacysteine 7 |