PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010518671.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 806aa    MW: 89725.8 Da    PI: 5.2863
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010518671.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.8e-20109164156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t+ q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  XP_010518671.1 109 KKRYHRHTARQIQEMEALFKECPHPDDKQRMRLSQELGLKPRQVKFWFQNRRTQMK 164
                     688899***********************************************998 PP
2START1532.5e-483165432206
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS...............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv..............dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                     la ++ qelvk+ + +ep+W++ s+ + g+e+l   +++ +               + ea+ra +vv+m++ +lv ++ld   +W  ++     +
  XP_010518671.1 316 LAVSCVQELVKMCKTNEPLWMRRSSDKVGEESLCLNADEYTrlfpwpleehdkgdLKREASRANAVVIMNSITLVDSFLDAD-KWADMFCsivaR 409
                     57899*******************77777777666655555678888999999999**************************.*****999999* PP

                     EEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEE CS
           START  79 aetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvt 165
                     a+t++ issg     g l+lm+aelq+lsplvp R+ +f+Ry +q  ++g+w++vd  +ds  ++ +   ++ R  + pSg+li++++ng+s+vt
  XP_010518671.1 410 AKTVQIISSGvsgesGSLVLMYAELQVLSPLVPtREAYFLRYVEQnAEEGSWTVVDFPIDSFHNRIQpVTPFYR--RKPSGCLIQDMPNGYSQVT 502
                     *********************************************************99988887666556666..7****************** PP

                     EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     wveh++++++++h+ lr  +ksg+a+ga++w+  l+rqce+
  XP_010518671.1 503 WVEHTEVEEKHVHETLREYMKSGMAFGANRWLNVLRRQCER 543
                     ***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.84E-2097167IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-21105172IPR009057Homeodomain-like
PROSITE profilePS5007117.184106166IPR001356Homeobox domain
SMARTSM003899.1E-19107170IPR001356Homeobox domain
CDDcd000862.25E-18109167No hitNo description
PfamPF000465.4E-18109164IPR001356Homeobox domain
PROSITE patternPS000270141164IPR017970Homeobox, conserved site
PROSITE profilePS5084844.378306546IPR002913START domain
SuperFamilySSF559613.57E-30308545No hitNo description
CDDcd088751.65E-99310542No hitNo description
SMARTSM002341.9E-31315543IPR002913START domain
PfamPF018525.3E-41316543IPR002913START domain
SuperFamilySSF559614.12E-16580790No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 806 aa     Download sequence    Send to blast
MYGELQVMPT VGGGGGNVVT TDDLFASPSS SPIQNPNFNF IPFNPFCSVI PKEENNGAMM  60
MRMMMMGSSS GKEEKLESGS GSEHADDDPK SINEHDVTTS QLHDPPSKKK RYHRHTARQI  120
QEMEALFKEC PHPDDKQRMR LSQELGLKPR QVKFWFQNRR TQMKAQQDRT ENVMLRAENE  180
NLKTENYRLQ AELSSLSCPS CGGPVVLGDF SFHELRVENS RLRDELDRLC CIATRCTGRP  240
IQSVQTPVQP SMNPPPLQQP QQPSLDLDMS VYHRNFPGPS CADMMMLPPP DGTECFFPEN  300
NDLLLAEEEK VIALDLAVSC VQELVKMCKT NEPLWMRRSS DKVGEESLCL NADEYTRLFP  360
WPLEEHDKGD LKREASRANA VVIMNSITLV DSFLDADKWA DMFCSIVARA KTVQIISSGV  420
SGESGSLVLM YAELQVLSPL VPTREAYFLR YVEQNAEEGS WTVVDFPIDS FHNRIQPVTP  480
FYRRKPSGCL IQDMPNGYSQ VTWVEHTEVE EKHVHETLRE YMKSGMAFGA NRWLNVLRRQ  540
CERVASLMAR NITDLGVIPS PEARKNLMRL AQRMIRTFCV NISTSYGQSW TALSESAQDT  600
VRITTRKLSE PGHPTGVVLC AVSTTWLPFS HHQVFDLLRD ERCRSQLEVM FNGNSLHEVA  660
HIANGSHPGN CISLLRVNVA SNSSHNVELM LQESCTDESG SLVIYSTVDV DAVQLTMSGE  720
DPSTIPLLPL GFSVVPVNPS DADADADANT ASCLLTVGIQ VLASSVPTAK LNISTVTTIN  780
NHLCSTVKQI SEALSAAAAP PPKQEG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010518671.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010518669.10.0PREDICTED: homeobox-leucine zipper protein HDG5-like
RefseqXP_010518670.10.0PREDICTED: homeobox-leucine zipper protein HDG5-like
RefseqXP_010518671.10.0PREDICTED: homeobox-leucine zipper protein HDG5-like
SwissprotQ9FJS20.0HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBLR0GUB60.0R0GUB6_9BRAS; Uncharacterized protein
STRINGXP_010518669.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]