PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG046204t1

Common Name

TCM_046204

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

WRKY

Protein Properties

Length: 546aa MW: 59633.6 Da PI: 7.4227

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG046204t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.6	3.4e-30	336	394	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers+ dp+++++tY+g+H+h+ Thecc1EG046204t1 336 SDPWAWRKYGQKPIKGSPYPRNYYRCSSSkGCAARKQVERSNFDPNIFIVTYTGDHTHP 394 699**********************998**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.0E-30	322	396	IPR003657	WRKY domain
PROSITE profile	PS50811	32.466	330	396	IPR003657	WRKY domain
SuperFamily	SSF118290	4.58E-26	333	396	IPR003657	WRKY domain
SMART	SM00774	8.7E-37	335	395	IPR003657	WRKY domain
Pfam	PF03106	1.7E-25	337	394	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007263	Biological Process	nitric oxide mediated signal transduction
GO:0009739	Biological Process	response to gibberellin
GO:0042742	Biological Process	defense response to bacterium
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence Send to blast
MTPEPLFAVK PSVKSQRFHS SNSLWKQRTP DHHPPRKMMN DGPTKSRRQV PRGVYSHGND 60 SPTAREVHHF SDEDACSVPN NCFCIEFPYR REDPKRKRRV KIGFLKVSRL IGVLEMAEDW 120 DLYAVVRSCS SAANTTATAS NNFTNENGSS CREDPLACLA SLKFEEEDDL FSFPNLSQLR 180 KSGSLQDSYK PFLPYADPTT TSTNQGIDPS SSSSVPGGSS GQHHQHQRLK QQQEQPTTTS 240 IGISPPLTPT SAPIFAFGQS GNQQPPQHVQ EQPQPQQQNP LHRQHQLQQR VQQQEGQRPA 300 AILPLRNMNS QAPRSRKRKN QQKRTVCHVA VDNLSSDPWA WRKYGQKPIK GSPYPRNYYR 360 CSSSKGCAAR KQVERSNFDP NIFIVTYTGD HTHPRPTHRN SLAGSTRNKL STIQKAASKD 420 SAPEALPSAS CSSPRSATSL SPTTPLSAPE DAAAPQHNTD GINGGEEESV DMTLETALDG 480 ESDEDDDPLI PNDHVDEDLF KGLEELVGGA DAGSTSSGLG TSPAFGDDFP SWGSGNSTAA 540 AGGGC*

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence Send to blast

MTPEPLFAVK PSVKSQRFHS SNSLWKQRTP DHHPPRKMMN DGPTKSRRQV PRGVYSHGND  60
SPTAREVHHF SDEDACSVPN NCFCIEFPYR REDPKRKRRV KIGFLKVSRL IGVLEMAEDW  120
DLYAVVRSCS SAANTTATAS NNFTNENGSS CREDPLACLA SLKFEEEDDL FSFPNLSQLR  180
KSGSLQDSYK PFLPYADPTT TSTNQGIDPS SSSSVPGGSS GQHHQHQRLK QQQEQPTTTS  240
IGISPPLTPT SAPIFAFGQS GNQQPPQHVQ EQPQPQQQNP LHRQHQLQQR VQQQEGQRPA  300
AILPLRNMNS QAPRSRKRKN QQKRTVCHVA VDNLSSDPWA WRKYGQKPIK GSPYPRNYYR  360
CSSSKGCAAR KQVERSNFDP NIFIVTYTGD HTHPRPTHRN SLAGSTRNKL STIQKAASKD  420
SAPEALPSAS CSSPRSATSL SPTTPLSAPE DAAAPQHNTD GINGGEEESV DMTLETALDG  480
ESDEDDDPLI PNDHVDEDLF KGLEELVGGA DAGSTSSGLG TSPAFGDDFP SWGSGNSTAA  540
AGGGC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-18	319	397	2	80	Disease resistance protein RRS1
5w3x_D	1e-18	319	397	2	80	Disease resistance protein RRS1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00561	DAP	Transfer from AT5G52830	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017972970.1	0.0	PREDICTED: probable WRKY transcription factor 27 isoform X1
TrEMBL	S1RTM8	0.0	S1RTM8_THECC; WRKY DNA-binding protein 27, putative
STRING	EOY20308	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9998	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52830.1	5e-59	WRKY DNA-binding protein 27

Link Out ? help Back to Top
Phytozome	Thecc1EG046204t1
Entrez Gene	18507032

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]