PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG045556t2
Common NameTCM_045556
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family WRKY
Protein Properties Length: 295aa    MW: 33634.4 Da    PI: 7.501
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG045556t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.98.8e-23130190159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                       ++Dg++WrKYGqKe+ ++++p sY+rCt +   gC+++k+v+r ++d ++++++Y g+H+++
  Thecc1EG045556t2 130 MEDGHAWRKYGQKEILNAKHP-SYFRCTRKydqGCRATKQVQRMEDDSQMFQTVYIGSHTCR 190
                       58*******************.9*****998899*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.0E-23117190IPR003657WRKY domain
PROSITE profilePS5081116.455125187IPR003657WRKY domain
SuperFamilySSF1182907.98E-21128190IPR003657WRKY domain
SMARTSM007746.2E-32130191IPR003657WRKY domain
PfamPF031065.4E-22131190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGTTLFPCPE RLSSDKKRVI QELVHGQECA TQLQILFHKP SEERGQLTAK ELVQKILRSF  60
NETISVLSSC DSAQVSRNQA TNSNDDSPCC VDRRSEDSSE SRKRPSSKDR RGCYKRKRAA  120
NTWTVISAAM EDGHAWRKYG QKEILNAKHP SYFRCTRKYD QGCRATKQVQ RMEDDSQMFQ  180
TVYIGSHTCR DSSKAPQIIT DHSEPWKSYN MVTSGDSKIS SKQQHHHHHC LNPSPTTPTV  240
KQESKEETTA SDLTDWDSNV WKDIIGLSGF EIMDLQIKPV EFQSDFTFDE SEFV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-23124190269OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101117RKRPSSKDRRGCYKRKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017985156.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A061FTA00.0A0A061FTA0_THECC; WRKY DNA-binding protein 70, putative isoform 2
STRINGEOY201770.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.16e-41WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]