PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG045555t1
Common NameTCM_045555
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family WRKY
Protein Properties Length: 378aa    MW: 41274.2 Da    PI: 5.5153
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG045555t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.52.3e-27199259259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                       +D ++WrKYGqKe+ gs++pr+YYrCt++   +Cp+kk+v+r ++d  ++e+tY g+H+++
  Thecc1EG045555t1 199 EDNFTWRKYGQKEILGSRYPRAYYRCTHQklyNCPAKKQVQRLDNDFYTFEVTYIGQHTCH 259
                       79***************************999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-26194260IPR003657WRKY domain
SuperFamilySSF1182906.41E-25196260IPR003657WRKY domain
SMARTSM007748.0E-35198260IPR003657WRKY domain
PROSITE profilePS5081120.025199261IPR003657WRKY domain
PfamPF031063.7E-24199259IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MVKSETDKAK RKRPDQTMEE TFSLMLHGCK LAKDLESNLG NLANQPEILS KSCDDIVKVF  60
AAAKERLNAD QDPALFTQLL RQSPSSSQQP QQSTDPSLQE WLKYGVITQA MDMIQQQILA  120
GKAPLETNEM GGKNLLEGSA SAPLKGSVGG EIQAMELSDS GRGSSSSSQR PRRSRKDDEE  180
KCTMTVPAPQ MGNTDLPPED NFTWRKYGQK EILGSRYPRA YYRCTHQKLY NCPAKKQVQR  240
LDNDFYTFEV TYIGQHTCHM SSTAPSIPPP PPLETGTQDQ IMTQAMVSQP TPASSSSVPL  300
GRWLSMEFTS LASASCGSGS GGAGGSTATA RYGREVDYPV VADMADVMFN SGSSSSNSME  360
FIFPSMEDKW EAGDKKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-18199258968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007011366.20.0PREDICTED: WRKY transcription factor 55
TrEMBLA0A061FSX10.0A0A061FSX1_THECC; WRKY DNA-binding protein 55, putative
STRINGEOY201760.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36412757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.15e-56WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]