PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG044739t1 | ||||||||
Common Name | TCM_044739 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | NAC | ||||||||
Protein Properties | Length: 171aa MW: 19582.4 Da PI: 8.6162 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 74.2 | 3.1e-23 | 11 | 143 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.lel.eevikevdiykv.ePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 +G+rF+P+d l+ yL k++gk+ l+l ++vik++d+y ePw++ + ++ + +++yfF++++kk++++++ nr + +g+W t Thecc1EG044739t1 11 LVGLRFQPSDAMLL-GYLFSKITGKSrLHLdQQVIKDFDLYGEkEPWEIWElyggdNL-RSGEDLYFFTQSKKKTQNSSKMNRLIGTGTWMIT 101 68*********999.8999999999874441357******96449****743344322.245689**************************** PP NAM 87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 g ++++ + + + g kk + + g+ + + ++W+m ey+l Thecc1EG044739t1 102 GPAEAITYSqlSAQPLGFKKRFRYK-GEVAQ-QVSQWIMFEYSL 143 ******998777888********98.54444.69********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.15E-25 | 8 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 25.88 | 10 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-13 | 12 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MEDNNAVAPL LVGLRFQPSD AMLLGYLFSK ITGKSRLHLD QQVIKDFDLY GEKEPWEIWE 60 LYGGDNLRSG EDLYFFTQSK KKTQNSSKMN RLIGTGTWMI TGPAEAITYS QLSAQPLGFK 120 KRFRYKGEVA QQVSQWIMFE YSLDTNLVSK NDCNYVLCQL KKKDLKEEKG * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017984359.1 | 1e-122 | PREDICTED: NAC domain-containing protein 101 | ||||
TrEMBL | A0A061FQK3 | 1e-123 | A0A061FQK3_THECC; Uncharacterized protein | ||||
STRING | EOY19595 | 1e-124 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62380.1 | 7e-16 | NAC-domain protein 101 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG044739t1 |
Entrez Gene | 18587065 |
Publications ? help Back to Top | |||
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