PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG044608t4

Common Name

TCM_044608

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

FAR1

Protein Properties

Length: 859aa MW: 96930.4 Da PI: 6.7902

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG044608t4	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	48.5	2.9e-15	65	140	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+ YA+++GFs+ + + k+ k +g i++ +f Cs+e +++++ ++ C+a++++++++ gkw+ tk++++HnH+++ Thecc1EG044608t4 65 SFYDGYARQLGFSTHVGQFKRAKPDGPIVTWDFACSREVFKRKNIES--------------CNAMFRIEQKDGGKWVATKFVEDHNHSMV 140 5**************************************998877..............************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-12	65	140	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.7E-31	271	363	IPR018289	MULE transposase domain
Pfam	PF04434	2.8E-12	548	582	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.301	548	584	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.6E-8	559	586	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 859 aa Download sequence Send to blast
MDVGGGKGDN VTGVNVVSNK GGDNNWDVTE QSPEIEVVVN QDDDGAGGGK PCVGMEFESE 60 DAGKSFYDGY ARQLGFSTHV GQFKRAKPDG PIVTWDFACS REVFKRKNIE SCNAMFRIEQ 120 KDGGKWVATK FVEDHNHSMV TPSKVHYLRP RRHFAGATKN VPETLDATTD VFVSVDGNHV 180 SYEANRVRSA SSVEPNRLVR NMMPVGYVRP SNQRRMLGRD AQNLLNYFKK MQAENPGFYY 240 AIQLDDDNRM TNVFWADARS RTAYNYFGDA VIFDTMYRPN QYQIPFAPFT GINHHGQTVL 300 FGCALLLDES ESSFAWLFKT WLSAMNDRPP LSITTDQDRA IQAAVSQVFP ETRHCICRWH 360 ILREGQERLA HIYLVHPSFY GELYGCINFS EAIEDFESSW SALLDKYDLH KNEWLQAVYN 420 ARKQWAPVYF RGTFFATLSS NQGVSSFFDG YVHQQTTIPL FFKQYERALE HSLEKEIEAD 480 CDTICTTPVL KTPSPMEQQA ANLYTKKVFS KFQEELVETF VYTANKIEGD GIASKYRVAK 540 YEHDHKAYFV TLNVSEMKAS CSCQMFEYSG ILCRHILTVF TVTNVLTLPS HYILKRWTRN 600 AKSWVGLDDQ PPDPQGIETL TTRFNSLCQE AFKLAEEGAV APETYNTAIS ALREAGKRIA 660 FVKKNVVKVT LPSSHNSGNS HEEGSKKITS PVSDIVPSLW PWQDAVSPRF NLNDVGAPLA 720 DLNQPSMVPV SIHRDSGHPD STVVLTCFKS MTWVIENKNA MEAGKVAVIN LKLHDYGKNP 780 SGETEVQFRL TRITLEPMLR SMAYISQQLS TPVNRVAVIN LKLQDTKTTS GETEVKFQVS 840 RDTLGSMLRS MAYIREQL*

Sequence ? help Back to Top

Protein Sequence Length: 859 aa Download sequence Send to blast

MDVGGGKGDN VTGVNVVSNK GGDNNWDVTE QSPEIEVVVN QDDDGAGGGK PCVGMEFESE  60
DAGKSFYDGY ARQLGFSTHV GQFKRAKPDG PIVTWDFACS REVFKRKNIE SCNAMFRIEQ  120
KDGGKWVATK FVEDHNHSMV TPSKVHYLRP RRHFAGATKN VPETLDATTD VFVSVDGNHV  180
SYEANRVRSA SSVEPNRLVR NMMPVGYVRP SNQRRMLGRD AQNLLNYFKK MQAENPGFYY  240
AIQLDDDNRM TNVFWADARS RTAYNYFGDA VIFDTMYRPN QYQIPFAPFT GINHHGQTVL  300
FGCALLLDES ESSFAWLFKT WLSAMNDRPP LSITTDQDRA IQAAVSQVFP ETRHCICRWH  360
ILREGQERLA HIYLVHPSFY GELYGCINFS EAIEDFESSW SALLDKYDLH KNEWLQAVYN  420
ARKQWAPVYF RGTFFATLSS NQGVSSFFDG YVHQQTTIPL FFKQYERALE HSLEKEIEAD  480
CDTICTTPVL KTPSPMEQQA ANLYTKKVFS KFQEELVETF VYTANKIEGD GIASKYRVAK  540
YEHDHKAYFV TLNVSEMKAS CSCQMFEYSG ILCRHILTVF TVTNVLTLPS HYILKRWTRN  600
AKSWVGLDDQ PPDPQGIETL TTRFNSLCQE AFKLAEEGAV APETYNTAIS ALREAGKRIA  660
FVKKNVVKVT LPSSHNSGNS HEEGSKKITS PVSDIVPSLW PWQDAVSPRF NLNDVGAPLA  720
DLNQPSMVPV SIHRDSGHPD STVVLTCFKS MTWVIENKNA MEAGKVAVIN LKLHDYGKNP  780
SGETEVQFRL TRITLEPMLR SMAYISQQLS TPVNRVAVIN LKLQDTKTTS GETEVKFQVS  840
RDTLGSMLRS MAYIREQL*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243076	0.0	AC243076.1 Gossypium arboreum clone GAH047E15-jmp, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007010683.2	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3
Refseq	XP_007010685.2	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3
Refseq	XP_017985031.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A061FXE3	0.0	A0A061FXE3_THECC; Far1-related sequence 3 isoform 1
STRING	EOY19492	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	Thecc1EG044608t4
Entrez Gene	18586986

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]