PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG043360t2
Common NameTCM_043360
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 424aa    MW: 48389.1 Da    PI: 4.4487
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG043360t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.62.1e-5291351128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       l+pGfrFhPtdeelv +yLk+kv +k+   +++i+ vd+y++ePwdLp k k+k+++ ewyfFs  dkky +g+r+nrat++gyWk+tgkd++
  Thecc1EG043360t2   9 LAPGFRFHPTDEELVRYYLKRKVLNKP--SFDAISVVDVYRSEPWDLPdKsKLKSRDLEWYFFSALDKKYGNGSRTNRATERGYWKTTGKDRP 99 
                       579***********************9..3478**************95347777888*********************************** PP

               NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +   ++++vg+kktLv++kgrap+ge+t+Wvmheyrl
  Thecc1EG043360t2 100 IRY-RERVVGMKKTLVYHKGRAPRGERTNWVMHEYRL 135
                       **9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-606158IPR003441NAC domain
PROSITE profilePS5100557.6769158IPR003441NAC domain
PfamPF023653.2E-2811135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MSRHSATSLA PGFRFHPTDE ELVRYYLKRK VLNKPSFDAI SVVDVYRSEP WDLPDKSKLK  60
SRDLEWYFFS ALDKKYGNGS RTNRATERGY WKTTGKDRPI RYRERVVGMK KTLVYHKGRA  120
PRGERTNWVM HEYRLIDEEL EKSGIQQGAF VLCRVFQKSG SGPKNGEQYG APFIEEEWED  180
DEAIFVPGQH AVAMDEEVAN YDAFVEVNDF DKNLDIGSPS ENAIPPQNFY HGQSNNYVEY  240
SREFSEDYQK PPGNMSGNAL LPSNFYHGES SNHAEHSMEF TEDYQKPTVM HSTESDSKPH  300
HEHVFSDLPQ PNGIATIVKP VKDEYVVEPI ENVNPADNNY FLDEPYLDVT DYLPANDGFF  360
LEANDLSNPI GPESDVFDPD EYLTFIDADD QPLAFDSDQM VGSEIPVSDQ EPLAQTVHNS  420
FLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-44516413171NO APICAL MERISTEM PROTEIN
1ut4_B5e-44516413171NO APICAL MERISTEM PROTEIN
1ut7_A5e-44516413171NO APICAL MERISTEM PROTEIN
1ut7_B5e-44516413171NO APICAL MERISTEM PROTEIN
3swm_A6e-44516416174NAC domain-containing protein 19
3swm_B6e-44516416174NAC domain-containing protein 19
3swm_C6e-44516416174NAC domain-containing protein 19
3swm_D6e-44516416174NAC domain-containing protein 19
3swp_A6e-44516416174NAC domain-containing protein 19
3swp_B6e-44516416174NAC domain-containing protein 19
3swp_C6e-44516416174NAC domain-containing protein 19
3swp_D6e-44516416174NAC domain-containing protein 19
4dul_A5e-44516413171NAC domain-containing protein 19
4dul_B5e-44516413171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007010050.20.0PREDICTED: NAC domain-containing protein 78
SwissprotQ84K001e-132NAC78_ARATH; NAC domain-containing protein 78
TrEMBLA0A061FP570.0A0A061FP57_THECC; NAC domain containing protein 2, putative isoform 2
STRINGEOY188600.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-134NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  5. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  6. Gladman NP,Marshall RS,Lee KH,Vierstra RD
    The Proteasome Stress Regulon Is Controlled by a Pair of NAC Transcription Factors in Arabidopsis.
    Plant Cell, 2016. 28(6): p. 1279-96
    [PMID:27194708]
  7. Tang Y,Zhao CY,Tan ST,Xue HW
    Arabidopsis Type II Phosphatidylinositol 4-Kinase PI4Kγ5 Regulates Auxin Biosynthesis and Leaf Margin Development through Interacting with Membrane-Bound Transcription Factor ANAC078.
    PLoS Genet., 2016. 12(8): p. e1006252
    [PMID:27529511]