PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG043360t1 | ||||||||
Common Name | TCM_043360 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | NAC | ||||||||
Protein Properties | Length: 591aa MW: 66197.3 Da PI: 4.6565 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.7 | 3.8e-52 | 9 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 l+pGfrFhPtdeelv +yLk+kv +k+ +++i+ vd+y++ePwdLp k k+k+++ ewyfFs dkky +g+r+nrat++gyWk+tgkd++ Thecc1EG043360t1 9 LAPGFRFHPTDEELVRYYLKRKVLNKP--SFDAISVVDVYRSEPWDLPdKsKLKSRDLEWYFFSALDKKYGNGSRTNRATERGYWKTTGKDRP 99 579***********************9..3478**************95347777888*********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++++vg+kktLv++kgrap+ge+t+Wvmheyrl Thecc1EG043360t1 100 IRY-RERVVGMKKTLVYHKGRAPRGERTNWVMHEYRL 135 **9.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.72E-60 | 6 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.676 | 9 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.9E-28 | 11 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0009962 | Biological Process | regulation of flavonoid biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 591 aa Download sequence Send to blast |
MSRHSATSLA PGFRFHPTDE ELVRYYLKRK VLNKPSFDAI SVVDVYRSEP WDLPDKSKLK 60 SRDLEWYFFS ALDKKYGNGS RTNRATERGY WKTTGKDRPI RYRERVVGMK KTLVYHKGRA 120 PRGERTNWVM HEYRLIDEEL EKSGIQQGAF VLCRVFQKSG SGPKNGEQYG APFIEEEWED 180 DEAIFVPGQH AVAMDEEVAN YDAFVEVNDF DKNLDIGSPS ENAIPPQNFY HGQSNNYVEY 240 SREFSEDYQK PPGNMSGNAL LPSNFYHGES SNHAEHSMEF TEDYQKPTVM HSTESDSKPH 300 HEHVFSDLPQ PNGIATIVKP VKDEYVVEPI ENVNPADNNY FLDEPYLDVT DYLPANDGFF 360 LEANDLSNPI GPESDVFDPD EYLTFIDADD QPLAFDSDQM VGSEIPVSDQ EPLAQTHSNG 420 GTEQVSNASE HLEELGNSDA SSSKQELEPT KFESGTKYPF LKQASHMLGS FPAPPAFASE 480 FPSKDAALKL NSAAQASSSV HVVAGMIRIT NMTSSGNQLD WSHSKNGNVN IVLSFSLPQG 540 DVNSSNFLPM ASLLSGKAGS VLARGWFFLM LLWVLIITVS LKFGTCIYTR * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 7e-44 | 8 | 164 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 7e-44 | 8 | 164 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 7e-44 | 8 | 164 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 7e-44 | 8 | 164 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 7e-44 | 8 | 164 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 7e-44 | 8 | 164 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 7e-44 | 8 | 164 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 7e-44 | 8 | 164 | 19 | 174 | NAC domain-containing protein 19 |
3ulx_A | 9e-44 | 8 | 164 | 14 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00059 | PBM | Transfer from AT5G04410 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007010050.2 | 0.0 | PREDICTED: NAC domain-containing protein 78 | ||||
Swissprot | Q84K00 | 1e-180 | NAC78_ARATH; NAC domain-containing protein 78 | ||||
TrEMBL | A0A061FNG1 | 0.0 | A0A061FNG1_THECC; NAC domain protein, IPR003441, putative isoform 1 | ||||
STRING | EOY18860 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3192 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 1e-166 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG043360t1 |
Entrez Gene | 18586536 |