PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG043199t1
Common NameTCM_043199
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 277aa    MW: 31316.3 Da    PI: 4.7847
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG043199t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM77.14.2e-2481543128
               NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvka......eekewyfFskrdkkya...tgkrknra......tk 79 
                       pG+ F+P+d e+v+++L k ++g+ +++ +  i+ +d+y ++P  L   v++      + ++ + F++r+k ++   +gkr++r+       +
  Thecc1EG043199t1   8 PGVVFNPSDREIVSFFLPKLMTGEGIDELSYlIEFCDLYCIKPDALFD-VNKgflpfvKPNQRFVFTHRQKISQknaNGKRPRRVldsravGD 99 
                       9************************99988879999**********63.22224455467799999999875443338999999856555444 PP

               NAM  80 sgyWkatgkdkevlsk.kgelvglkktLvfy.....kgrapkgektdWvmheyrl 128
                        g+W+++  +k++l++ +++++g  +tL fy     k + ++++kt+W+mheyrl
  Thecc1EG043199t1 100 GGFWRSSTGEKPILDEqGEHVIGYVNTLNFYeykgeKRNPKDATKTSWLMHEYRL 154
                       9****99999999998567789*********8866334555678*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-294168IPR003441NAC domain
PROSITE profilePS5100532.6866170IPR003441NAC domain
PfamPF023658.9E-158154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MMFHPPAPGV VFNPSDREIV SFFLPKLMTG EGIDELSYLI EFCDLYCIKP DALFDVNKGF  60
LPFVKPNQRF VFTHRQKISQ KNANGKRPRR VLDSRAVGDG GFWRSSTGEK PILDEQGEHV  120
IGYVNTLNFY EYKGEKRNPK DATKTSWLMH EYRLPRENFQ EWVICKIKDT ACSEEDKCVA  180
FWVNELFGNL FLGNKECPSS ALMQEAVFSG NLPLLDDGQC RPWVDNYVDG RLQQSENLEC  240
QSSILVERSE SRVNGFGEMD SNGLVGEGDL DGSVTG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007009879.20.0PREDICTED: uncharacterized protein LOC18586425
TrEMBLA0A061FPA80.0A0A061FPA8_THECC; Uncharacterized protein
STRINGEOY186980.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16333214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.11e-15vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]