PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG043185t1 | ||||||||
Common Name | TCM_043185 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | NAC | ||||||||
Protein Properties | Length: 413aa MW: 46250.7 Da PI: 4.1125 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 75 | 1.9e-23 | 8 | 154 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvka......eekewyfFskrdkkya...tgkrknra......tk 79 pG+ F+P+d e+v+++L k ++g+ + + + i+ +d+y ++P L v++ + ++ + F++r+k ++ +gkr++r+ + Thecc1EG043185t1 8 PGVVFNPSDREIVSFFLPKLMSGEGIGELSYlIEFCDLYCIKPAALFD-VNKgflpfvKPNQRFVFTHRQKISQknaNGKRPRRVldsraaGD 99 9************************88877769999**********63.22224455467799999999875443338999999856555444 PP NAM 80 sgyWkatgkdkevlsk.kgelvglkktLvfy.....kgrapkgektdWvmheyrl 128 g+W+++ +k++l+k +++++g +tL fy k + ++++kt+W+mheyrl Thecc1EG043185t1 100 GGFWRSSTGEKPILDKqGEHVIGYVNTLNFYeykgeKRSPKDATKTSWLMHEYRL 154 9****99999***999567779*********8866334556678*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.67E-29 | 4 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.082 | 6 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-14 | 8 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MMFYPPAPGV VFNPSDREIV SFFLPKLMSG EGIGELSYLI EFCDLYCIKP AALFDVNKGF 60 LPFVKPNQRF VFTHRQKISQ KNANGKRPRR VLDSRAAGDG GFWRSSTGEK PILDKQGEHV 120 IGYVNTLNFY EYKGEKRSPK DATKTSWLMH EYRLPGENFQ EWVICKIKDT ACSEEDKCVA 180 FWVKELFGNL LLGNKECPSS ALMQEAVFSG NLPLPDDGQC DPLIDNYVDG RLQQSENLEC 240 QSSILVEGSE SLVNGFGEMD SNGLVGEGYS LMDQLLDEDP FNEVDQLLGI SNNDQISNLD 300 ELVIDKSVDE LLREYEALID GDCLKEVDQL PGISNNNESS KSVEPVIVTG KNVDELSGGY 360 EELNYDDSFK EVDQLWGISN TDENSKLDEL FTDKDVDDIH ALLAFDHLPP LE* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007009879.2 | 0.0 | PREDICTED: uncharacterized protein LOC18586425 | ||||
TrEMBL | A0A061FV84 | 0.0 | A0A061FV84_THECC; Uncharacterized protein | ||||
STRING | EOY18689 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16333 | 2 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18060.1 | 4e-16 | vascular related NAC-domain protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG043185t1 |
Entrez Gene | 18586425 |
Publications ? help Back to Top | |||
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