PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG042799t1
Common NameTCM_042799
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family M-type_MADS
Protein Properties Length: 234aa    MW: 26046.4 Da    PI: 4.5524
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG042799t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.12.3e-181150342
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                      i ++s r+ tf  R++g+lKKA+ELS+LC++e++vii+s+
  Thecc1EG042799t1 11 ITDDSARKATFRIRKEGLLKKASELSTLCGIEACVIIYSP 50
                      8899***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.956149IPR002100Transcription factor, MADS-box
SMARTSM004323.2E-19160IPR002100Transcription factor, MADS-box
CDDcd002662.70E-30285No hitNo description
SuperFamilySSF554558.76E-23494IPR002100Transcription factor, MADS-box
PfamPF003193.2E-171151IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MTPRKEKFSY ITDDSARKAT FRIRKEGLLK KASELSTLCG IEACVIIYSP YDSQPVVWPS  60
PEGAQSVLSE FKKMPTMDQS TRMMNQESFL RQRIANANQQ LQRQSKDNRE KEITQVMFQC  120
LAGQGLESLN MMDLNDLGWL LEQNLEGIDK GIDTLTKASH SQGSVATASA TMATPEAMLK  180
SGEKVQAESP EREGSTETED WQQMIEELMH PSEDVGQGLV LPFGDNNPTA FFP*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007009374.21e-173PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-55AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A061FTZ71e-173A0A061FTZ7_THECC; Agamous-like MADS-box protein A
STRINGEOY181841e-174(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-58AGAMOUS-like 80
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]