PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG042744t1 | ||||||||
Common Name | TCM_042744 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | MYB_related | ||||||||
Protein Properties | Length: 65aa MW: 7227.1 Da PI: 7.708 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.5 | 1.3e-12 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 ++ WT+eE+e l+ +v+++ +g Wk I + +R+ ++k++w+++ Thecc1EG042744t1 5 KQIWTAEEEETLLAGVAKHSPGKWKNILEDPDfaphlPRRSNIDLKDKWRNL 56 577*************************9999999999************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.302 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.29E-15 | 2 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.3E-6 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-15 | 5 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 4.3E-10 | 8 | 62 | No hit | No description |
CDD | cd11660 | 3.81E-17 | 8 | 56 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 65 aa Download sequence Send to blast |
MGNQKQIWTA EEEETLLAGV AKHSPGKWKN ILEDPDFAPH LPRRSNIDLK DKWRNLSVST 60 SGQG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007024539.1 | 5e-34 | PREDICTED: telomere repeat-binding factor 4 | ||||
Refseq | XP_021294179.1 | 5e-34 | telomere repeat-binding factor 4 | ||||
Swissprot | F4I7L1 | 3e-26 | TRB4_ARATH; Telomere repeat-binding factor 4 | ||||
TrEMBL | A0A061FLB3 | 8e-40 | A0A061FLB3_THECC; Uncharacterized protein | ||||
STRING | EOY18105 | 1e-40 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16580 | 8 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17520.1 | 1e-28 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG042744t1 |
Entrez Gene | 18586073 |
Publications ? help Back to Top | |||
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