PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG042655t1

Common Name

TCM_042655

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NAC

Protein Properties

Length: 465aa MW: 52573.9 Da PI: 5.8307

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG042655t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	146.3	1.6e-45	103	233	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeek...ewyfFskrdkkyatgkrknratksgyWka 85 lppG+rF+P+deelvv+yL+kk+++k+l+ ++ikev++yk+ P +L + k + k ewyfF++r++ky +g r+nra+ +g+Wka Thecc1EG042655t1 103 LPPGYRFKPRDEELVVHYLRKKAHNKPLPP-NIIKEVELYKHSPDELTRdqnnnKST---KpvtEWYFFTPRERKYCNGLRPNRAAGDGFWKA 191 79***********************999.89**********8434433333...2455************************* PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tg d++v +g+ vg kktLvfy+g+ pkgekt+W+mhe+ l Thecc1EG042655t1 192 TGADTSVRF-QGTIVGFKKTLVFYRGKPPKGEKTTWIMHEFVL 233 ****9.999**************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.15E-51	101	260	IPR003441	NAC domain
PROSITE profile	PS51005	52.077	103	260	IPR003441	NAC domain
Pfam	PF02365	1.2E-24	104	233	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MMEQGEEGDQ GYQGFVLPKF TPNGQGDQGF MPPEFTSNGQ GDHGDQGFVL PNFTPNGQGD 60 QGFVLPMFNP NGQGDQGDQG FVLPRYTPNG LVITNEKEFL DTLPPGYRFK PRDEELVVHY 120 LRKKAHNKPL PPNIIKEVEL YKHSPDELTR DQNNNKSTKP VTEWYFFTPR ERKYCNGLRP 180 NRAAGDGFWK ATGADTSVRF QGTIVGFKKT LVFYRGKPPK GEKTTWIMHE FVLSNPPERK 240 RGSKDDMRLD DWVLCRLYKK HGNNTRVVTP QQDPDPDPKQ EEENAIQATD YTETLEQEYW 300 NIPPQYMLPQ QTCPMPPYVV YPDSTSVLPR SMPPYNAYAA DSTSVLLRSM PPYNAYSDST 360 SGLPSSMPPY NAYPDSPSGL PRFPESLDPM LQHQSAVFPQ QAMTVYDNFI PTAAPTLSIP 420 PHFVGHHYPL NSYQQQPFSG VRNNIKFSAD DKYLLNIDFG LPNV*

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MMEQGEEGDQ GYQGFVLPKF TPNGQGDQGF MPPEFTSNGQ GDHGDQGFVL PNFTPNGQGD  60
QGFVLPMFNP NGQGDQGDQG FVLPRYTPNG LVITNEKEFL DTLPPGYRFK PRDEELVVHY  120
LRKKAHNKPL PPNIIKEVEL YKHSPDELTR DQNNNKSTKP VTEWYFFTPR ERKYCNGLRP  180
NRAAGDGFWK ATGADTSVRF QGTIVGFKKT LVFYRGKPPK GEKTTWIMHE FVLSNPPERK  240
RGSKDDMRLD DWVLCRLYKK HGNNTRVVTP QQDPDPDPKQ EEENAIQATD YTETLEQEYW  300
NIPPQYMLPQ QTCPMPPYVV YPDSTSVLPR SMPPYNAYAA DSTSVLLRSM PPYNAYSDST  360
SGLPSSMPPY NAYPDSPSGL PRFPESLDPM LQHQSAVFPQ QAMTVYDNFI PTAAPTLSIP  420
PHFVGHHYPL NSYQQQPFSG VRNNIKFSAD DKYLLNIDFG LPNV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-49	102	263	16	168	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-49	102	263	16	168	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-49	102	263	16	168	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-49	102	263	16	168	NO APICAL MERISTEM PROTEIN
3swm_A	5e-49	102	263	19	171	NAC domain-containing protein 19
3swm_B	5e-49	102	263	19	171	NAC domain-containing protein 19
3swm_C	5e-49	102	263	19	171	NAC domain-containing protein 19
3swm_D	5e-49	102	263	19	171	NAC domain-containing protein 19
3swp_A	5e-49	102	263	19	171	NAC domain-containing protein 19
3swp_B	5e-49	102	263	19	171	NAC domain-containing protein 19
3swp_C	5e-49	102	263	19	171	NAC domain-containing protein 19
3swp_D	5e-49	102	263	19	171	NAC domain-containing protein 19
4dul_A	3e-49	102	263	16	168	NAC domain-containing protein 19
4dul_B	3e-49	102	263	16	168	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021296073.1	0.0	uncharacterized protein LOC110425462
TrEMBL	A0A061FMQ5	0.0	A0A061FMQ5_THECC; NAC domain protein, putative
STRING	EOY17972	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	1e-55	NAC-like, activated by AP3/PI

Link Out ? help Back to Top
Phytozome	Thecc1EG042655t1
Entrez Gene	18585994

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]