PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG042510t1
Common NameTCM_042510
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 409aa    MW: 45807.4 Da    PI: 8.9375
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG042510t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.93.1e-12269353186
                       EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldg 86 
                       f k+lt  dv k+  l++p ++++++       +s  l++ed++g  W + l+ rkk+    +++kGW +Fv+  +L+egD v F+ d 
  Thecc1EG042510t1 269 FSKTLTATDVQKR--LSIPFTCLKDFefH--GSNSAHLRVEDQNGSIWPFALSTRKKGYPkPIFSKGWLQFVRCSHLCEGDRVEFYKDT 353
                       7899999999886..9*******999652..446778***************76444333699**********************9443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-16264356IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.418267367IPR003340B3 DNA binding domain
SuperFamilySSF1019361.06E-13267359IPR015300DNA-binding pseudobarrel domain
CDDcd100171.00E-14268363No hitNo description
PfamPF023629.3E-9269353IPR003340B3 DNA binding domain
SMARTSM010190.002269367IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MNLKFLPVNI PSPFETHCDI MTMFIITILV YGTNFHTSFS HEIISKYISL LSGSLAPALL  60
ALILFPGYLG RLILLVWTIY FVKLTYDAWR KLYQLYNTIS SVSDFLNQLL GRRGLHNEES  120
IPYITSSSIS TATHQKHAIL GLLIAVFLAL LPLKFASMNT TAAPFETHSA ILSKFVITTL  180
VYAVAWAIET KLETRANSYH HAIISNISLL VGSLATVLLV LILVPGLGRR LEIQADAACV  240
DLKSQSPFLY EFGVGALTGV LRSDMELLFS KTLTATDVQK RLSIPFTCLK DFEFHGSNSA  300
HLRVEDQNGS IWPFALSTRK KGYPKPIFSK GWLQFVRCSH LCEGDRVEFY KDTKANGLYR  360
IQVQRCIKLF GKKCWVTPPL DQRRVNFEEG TEAAAEAEAK EEESKKNI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A061FL310.0A0A061FL31_THECC; Uncharacterized protein
STRINGEOY177910.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.11e-08ethylene response DNA binding factor 3
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]