PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG042508t1 | ||||||||
Common Name | TCM_042508 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | B3 | ||||||||
Protein Properties | Length: 147aa MW: 16786 Da PI: 8.2145 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.5 | 1.4e-14 | 5 | 93 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 f k+lt dv k+ l++p ++++++ g +s +l++ed++g W++ l+ rk++ ++++GW++Fv+ +L+egD v F+ d ++++ Thecc1EG042508t1 5 FAKTLTETDVQKR--LSIPFTCLKDFefhG---SNSAQLRVEDQNGSIWSFALSTRKNGHPkPIFSGGWRQFVRCGHLCEGDRVEFYKDTKENG 93 7899999999876..9*******9996533...46778***************87555544699***********************6544444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.0E-17 | 2 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.264 | 3 | 103 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.99E-15 | 4 | 99 | No hit | No description |
SuperFamily | SSF101936 | 2.55E-15 | 4 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0015 | 5 | 103 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.0E-11 | 5 | 93 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MEMLFAKTLT ETDVQKRLSI PFTCLKDFEF HGSNSAQLRV EDQNGSIWSF ALSTRKNGHP 60 KPIFSGGWRQ FVRCGHLCEG DRVEFYKDTK ENGFYRIQVQ RCIKLFGKKC WVALPLDQRR 120 VNFEEGTEAA AAAEAEAKEE ESKKNT* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A061FT63 | 1e-105 | A0A061FT63_THECC; Uncharacterized protein | ||||
STRING | EOY17789 | 1e-106 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16950 | 4 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25730.1 | 7e-09 | ethylene response DNA binding factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG042508t1 |
Entrez Gene | 18585862 |
Publications ? help Back to Top | |||
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