PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG042300t1
Common NameTCM_042300
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 272aa    MW: 30402.8 Da    PI: 6.2997
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG042300t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.93.8e-21122172155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       ++++GVr+++ +grW+AeIrdp++   rkr++lg+f+t+eeAa  +++a++ l+g
  Thecc1EG042300t1 122 KKFRGVRQRP-WGRWAAEIRDPTQ---RKRVWLGTFDTPEEAAIVYDKAALLLKG 172
                       59********.**********965...5**********************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381232.9E-719270IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000181.89E-34122181No hitNo description
PfamPF008474.0E-13123171IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-22123181IPR016177DNA-binding domain
SMARTSM003804.7E-40123186IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-31123181IPR001471AP2/ERF domain
PROSITE profilePS5103223.696123180IPR001471AP2/ERF domain
PRINTSPR003674.6E-10124135IPR001471AP2/ERF domain
PRINTSPR003674.6E-10146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MMSPQTQYSF SDLVKFTEHV ITTNKAPPQP TRNVPQKLLR IILTDADATD SSSDEEHDQP  60
TPTRRRLNTV RRVKRHVKEI NFQPLSPSSS ASTSTTSKSL VKQQPSTKRE RPSPQSDVTR  120
RKKFRGVRQR PWGRWAAEIR DPTQRKRVWL GTFDTPEEAA IVYDKAALLL KGPNAVTNFP  180
NPVSTEKDAA VDQRQGDSLD SSPCSSLSSP TSVIRCEELT LFDGLGYVNV DAFGFQIDVP  240
SYSTDLSLSD SFFAQEDEFS DFNVDDFLVG D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-20122185468ATERF1
3gcc_A3e-20122185468ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007017097.10.0PREDICTED: pathogenesis-related genes transcriptional activator PTI6
SwissprotO046823e-64PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A061GYW80.0A0A061GYW8_THECC; Pathogenesis-related genes transcriptional activator PTI6, putative
STRINGEOY347160.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2394944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.17e-32cytokinin response factor 3
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]