PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG042118t2
Common NameTCM_042118
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB_related
Protein Properties Length: 721aa    MW: 82603.8 Da    PI: 8.647
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG042118t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.71.5e-09510552146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       + +WT+eE el+ + v+++G++ Wk+ a t+g  + + ++k+ w+ 
  Thecc1EG042118t2 510 KRPWTPEEYELIQKFVEKHGPR-WKLLADTLG--KHRHHVKDTWRR 552
                       569*****************99.********9..788999998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.045436507IPR001005SANT/Myb domain
PROSITE profilePS512949.23506558IPR017930Myb domain
SMARTSM007170.026509556IPR001005SANT/Myb domain
SuperFamilySSF466894.24E-9510571IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-9512564IPR009057Homeodomain-like
PfamPF139211.6E-10513571No hitNo description
PROSITE profilePS500906.609555623IPR017877Myb-like domain
SMARTSM007175559625IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-5565609IPR009057Homeodomain-like
PROSITE profilePS500907.34625678IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.4E-5665679IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MGKKMHEKDG HKRVNNQVEE GNAVEKESDF LDVSAGNMND VSKLINRDHD KNKRKQDNCE  60
KKKDRMKKRK SEFDTDKKES QKAPKKHKKS KDGVGEVKEA SMEICRAGKE NIKNESSKAM  120
YLGNNFELEA KRAWKDKHKN KIRDGIDAVT TATETLEHGK MQETVEVLKS CSTEDINKMV  180
HGKEREYEKR KKKKHNLEKV TGNVDGHIAV MSSITDGNET DKKKDREDGN VIKKVEDSRN  240
GKKRKKKSIN YGLDVDKPRK TSTGIENHEF LYSNVELNGN AVECRKLGIA VDNDEDGNRD  300
KKKKKKKKSK SLKTGSDGKE HQSFKGYKDR EVDSNDKEDP ADNEVECTEL GGGVDNTEDG  360
NRGRKKKSKS VKSDSEGKHH KGDARTRKSV NTTNQSEDAA PKDISKKVSF SDHVEVFPCA  420
DGIVDENMDG KEGLVYGKRY SKEEDAIVMD AVANYIESNN LGEEGLDMVL NCRAYPQVRN  480
CWKEIQAAIP WRPCDSVYRR AHVLFERDEK RPWTPEEYEL IQKFVEKHGP RWKLLADTLG  540
KHRHHVKDTW RRIKLTNAKR GNWSQEEYQN LFDLVNLDLS MKAFEEKKSK HGMLRDNICW  600
SAISDKMETR GFALCCKKWY YSLASPMVAE GIWADADDYR MLDALSSLDA CCMEDVDWDN  660
LIEHRSGDLC RKRWNQMVQH IGPHGVKSFA EQVEVLANRY RPDMLDAREA YDSKCPVDLP  720
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15269KRKQDNCEKKKDRMKKRK
2182191KEREYEKRKK
3241245KKRKK
4301307KKKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4726401e-34AM472640.2 Vitis vinifera contig VV78X136286.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017983247.10.0PREDICTED: RNA polymerase I termination factor
RefseqXP_017983248.10.0PREDICTED: RNA polymerase I termination factor
TrEMBLA0A061H0A40.0A0A061H0A4_THECC; Cyclin-D-binding Myb-like transcription factor 1 isoform 1
STRINGEOY344390.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-127MYB_related family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]