PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG042118t1 | ||||||||
Common Name | TCM_042118 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 721aa MW: 82603.8 Da PI: 8.647 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.7 | 1.5e-09 | 510 | 552 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + +WT+eE el+ + v+++G++ Wk+ a t+g + + ++k+ w+ Thecc1EG042118t1 510 KRPWTPEEYELIQKFVEKHGPR-WKLLADTLG--KHRHHVKDTWRR 552 569*****************99.********9..788999998886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.045 | 436 | 507 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 9.23 | 506 | 558 | IPR017930 | Myb domain |
SMART | SM00717 | 0.026 | 509 | 556 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.24E-9 | 510 | 571 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-9 | 512 | 564 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 1.6E-10 | 513 | 571 | No hit | No description |
PROSITE profile | PS50090 | 6.609 | 555 | 623 | IPR017877 | Myb-like domain |
SMART | SM00717 | 5 | 559 | 625 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-5 | 565 | 609 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.34 | 625 | 678 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-5 | 665 | 679 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 721 aa Download sequence Send to blast |
MGKKMHEKDG HKRVNNQVEE GNAVEKESDF LDVSAGNMND VSKLINRDHD KNKRKQDNCE 60 KKKDRMKKRK SEFDTDKKES QKAPKKHKKS KDGVGEVKEA SMEICRAGKE NIKNESSKAM 120 YLGNNFELEA KRAWKDKHKN KIRDGIDAVT TATETLEHGK MQETVEVLKS CSTEDINKMV 180 HGKEREYEKR KKKKHNLEKV TGNVDGHIAV MSSITDGNET DKKKDREDGN VIKKVEDSRN 240 GKKRKKKSIN YGLDVDKPRK TSTGIENHEF LYSNVELNGN AVECRKLGIA VDNDEDGNRD 300 KKKKKKKKSK SLKTGSDGKE HQSFKGYKDR EVDSNDKEDP ADNEVECTEL GGGVDNTEDG 360 NRGRKKKSKS VKSDSEGKHH KGDARTRKSV NTTNQSEDAA PKDISKKVSF SDHVEVFPCA 420 DGIVDENMDG KEGLVYGKRY SKEEDAIVMD AVANYIESNN LGEEGLDMVL NCRAYPQVRN 480 CWKEIQAAIP WRPCDSVYRR AHVLFERDEK RPWTPEEYEL IQKFVEKHGP RWKLLADTLG 540 KHRHHVKDTW RRIKLTNAKR GNWSQEEYQN LFDLVNLDLS MKAFEEKKSK HGMLRDNICW 600 SAISDKMETR GFALCCKKWY YSLASPMVAE GIWADADDYR MLDALSSLDA CCMEDVDWDN 660 LIEHRSGDLC RKRWNQMVQH IGPHGVKSFA EQVEVLANRY RPDMLDAREA YDSKCPVDLP 720 * |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 52 | 69 | KRKQDNCEKKKDRMKKRK |
2 | 182 | 191 | KEREYEKRKK |
3 | 241 | 245 | KKRKK |
4 | 301 | 307 | KKKKKKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AM472640 | 1e-34 | AM472640.2 Vitis vinifera contig VV78X136286.3, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017983247.1 | 0.0 | PREDICTED: RNA polymerase I termination factor | ||||
Refseq | XP_017983248.1 | 0.0 | PREDICTED: RNA polymerase I termination factor | ||||
TrEMBL | A0A061H0A4 | 0.0 | A0A061H0A4_THECC; Cyclin-D-binding Myb-like transcription factor 1 isoform 1 | ||||
STRING | EOY34439 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6327 | 25 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G41020.1 | 1e-127 | MYB_related family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG042118t1 |
Entrez Gene | 18590928 |
Publications ? help Back to Top | |||
---|---|---|---|
|