PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG042009t1

Common Name

TCM_042009

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

FAR1

Protein Properties

Length: 882aa MW: 99479.4 Da PI: 6.7111

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG042009t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.8	2.6e-16	63	136	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y+eYA+++GFs + + ++sk +g+i++r+fvC +eg ++++ ++ C+a l+++++ +kw+vtk+++eH+H+++ Thecc1EG042009t1 63 YYDEYARRMGFSSKAGQLTRSKIDGTIVSREFVCGREGLKRRSADS--------------CDALLRIELK-GDKWVVTKFVKEHSHSMV 136 8************************************9998877..............******.9************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.5E-13	63	136	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.0E-26	275	367	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.078	553	589	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.8E-10	555	587	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.8E-8	564	591	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 882 aa Download sequence Send to blast
MDVHVIDAEE GLGHRGMSDD GDAEPNEGGE ANNAENSLAH DEDGISEPYV AMEFNAEDAA 60 KTYYDEYARR MGFSSKAGQL TRSKIDGTIV SREFVCGREG LKRRSADSCD ALLRIELKGD 120 KWVVTKFVKE HSHSMVSPSK VHYLRPRRHF AGAAKTMADS YQGVGIVPSG VMYVSMDGNR 180 ASMDANNRGL RNTPPAEANR SVKNIGTPNY AVRPVNRKRT LGRDAQNLLD YFKKMQAENP 240 GFFYAIQLDD DNRMANVFWA DARSRTAYMH FGDAVTLDTS YRVNQYRVPF APFTGVNHHG 300 QTILFGCALL LDDSEASFVW LFKTFLTAMN DRQPVSLITD LDRAIQTAVS QVFPGVRHCI 360 NKWHVLREGP EKLAHVCHVH PNFQVELYNC INLTETIEEF ELSWSSILEK YDLRGHDWLQ 420 SLYNSRAQWV PVYFRDSFFA AISPNQGFDG SFFDGYVNQQ TTIPMFFRQY ERAIENWFEK 480 EIEADFDTIC TTPVLRTPSP MEKQAANLFT RKIFTKFQEE LVETFVYTAN RIEGDAAIST 540 FRVAKFEDDN KAYIVTLNYP EMRANCSCQM FEYSGILCRH VLTVFTVTNV LTLPSHYILK 600 RWTRNAKSVV ATDERSSELL AQESLTVRYN SLCREAIKYA EEGAIATETY NVAMGTLKEG 660 GKKISVVKKN VAKVAPPSSL ASGAAYDDRK SSTSAPDTAP LLWPRQDEIT RRFNLNDTGA 720 PAQSVSDLNL PRMAPVSLHR DDGHPDNMPV LPCLKSMTWV MENKNSTPGN RVAVINLKLQ 780 DYSKNPSAEM EVKFQLSRVT LEPMLRSMAY ISEQLSTPAN RVAVINLKLQ DTETTTGESE 840 VKFQVSRDTL GAMLRSMAYI REQLSNVTEP QAEPLLKKHR K*

Sequence ? help Back to Top

Protein Sequence Length: 882 aa Download sequence Send to blast

MDVHVIDAEE GLGHRGMSDD GDAEPNEGGE ANNAENSLAH DEDGISEPYV AMEFNAEDAA  60
KTYYDEYARR MGFSSKAGQL TRSKIDGTIV SREFVCGREG LKRRSADSCD ALLRIELKGD  120
KWVVTKFVKE HSHSMVSPSK VHYLRPRRHF AGAAKTMADS YQGVGIVPSG VMYVSMDGNR  180
ASMDANNRGL RNTPPAEANR SVKNIGTPNY AVRPVNRKRT LGRDAQNLLD YFKKMQAENP  240
GFFYAIQLDD DNRMANVFWA DARSRTAYMH FGDAVTLDTS YRVNQYRVPF APFTGVNHHG  300
QTILFGCALL LDDSEASFVW LFKTFLTAMN DRQPVSLITD LDRAIQTAVS QVFPGVRHCI  360
NKWHVLREGP EKLAHVCHVH PNFQVELYNC INLTETIEEF ELSWSSILEK YDLRGHDWLQ  420
SLYNSRAQWV PVYFRDSFFA AISPNQGFDG SFFDGYVNQQ TTIPMFFRQY ERAIENWFEK  480
EIEADFDTIC TTPVLRTPSP MEKQAANLFT RKIFTKFQEE LVETFVYTAN RIEGDAAIST  540
FRVAKFEDDN KAYIVTLNYP EMRANCSCQM FEYSGILCRH VLTVFTVTNV LTLPSHYILK  600
RWTRNAKSVV ATDERSSELL AQESLTVRYN SLCREAIKYA EEGAIATETY NVAMGTLKEG  660
GKKISVVKKN VAKVAPPSSL ASGAAYDDRK SSTSAPDTAP LLWPRQDEIT RRFNLNDTGA  720
PAQSVSDLNL PRMAPVSLHR DDGHPDNMPV LPCLKSMTWV MENKNSTPGN RVAVINLKLQ  780
DYSKNPSAEM EVKFQLSRVT LEPMLRSMAY ISEQLSTPAN RVAVINLKLQ DTETTTGESE  840
VKFQVSRDTL GAMLRSMAYI REQLSNVTEP QAEPLLKKHR K*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007016659.2	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X2
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A061H072	0.0	A0A061H072_THECC; FAR1-related sequence 3 isoform 1
STRING	EOY34283	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	Thecc1EG042009t1
Entrez Gene	18590838

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]