PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG041816t2
Common NameTCM_041816
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB_related
Protein Properties Length: 518aa    MW: 57028.1 Da    PI: 7.6118
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG041816t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-07398447147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                       r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Thecc1EG041816t2 398 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 447
                       6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.733393452IPR017930Myb domain
SMARTSM007172.0E-7397450IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-10398448IPR009057Homeodomain-like
SuperFamilySSF466897.75E-16399480IPR009057Homeodomain-like
CDDcd116601.02E-17399449No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYRVPATP RATRSARKRV PFRKRFEDNQ ISAFDLLATV AGNLLLGKES  60
TPTSSNKSSG EDQSAVVKNT VKEERRDGDQ SLKVETSNQD RTDRKFFVSE LVPQTNDLNY  120
SSKESPSLQN DAHFGFASVI TTSDCSERYD AQKLMNGKTE NEMGSFPCKV ETGPFVCGTS  180
GDCIKPESQN KGLMYEELDR TDKISIGEVA DTCPLEDPVL LDGKPPALVS SDDSGKARSC  240
GDCSPRSSFP AKQDDVNVVR DDNKTLLQTG ISRDNQMDAL GFSLEPNPSQ TSPLLCRGGS  300
PLTLPCDSPL PLARYPTTPR LANQVICDPS PLPHMANLGN FVESDHDSAP SPTDMSLEKS  360
TTDSKALVAV PAMSVEALAV VPAHRKSKRS EVVQRRIRRP FSVAEVEALV QAVEKLGTGR  420
WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR VLTAHAYWSQ  480
QQAKQQLKPQ QPETCLLLYN STIRGGSTCD VVEKTLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A6e-603824891108Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007016385.20.0PREDICTED: telomere repeat-binding protein 5
SwissprotQ6R0E32e-87TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A061GVW70.0A0A061GVW7_THECC; TRF-like 2, putative isoform 2
STRINGEOY340040.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.12e-73TRF-like 2
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]