PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG041816t1
Common NameTCM_041816
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB_related
Protein Properties Length: 717aa    MW: 78888 Da    PI: 9.2139
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG041816t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07597646147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                       r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Thecc1EG041816t1 597 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 646
                       6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.01E-6401490IPR029071Ubiquitin-related domain
PROSITE profilePS5129414.733592651IPR017930Myb domain
SMARTSM007172.0E-7596649IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-10597647IPR009057Homeodomain-like
CDDcd116602.10E-17598648No hitNo description
SuperFamilySSF466891.35E-15598679IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYRVPATP RATRSARKRV PFRKRFEDNQ ISAFDLLATV AGNLLLGKES  60
TPTSSNKSSG EDQSAVVKNT VKEERRDGDQ SLKVETSNQD RTDRKFFVSE LVPQTNDLNY  120
SSKESPSLQN DAHFGFASVI TTSDCSERYD AQKLMNGKTE NEMGSFPCKV ETGPFVCGTS  180
GDCIKPESQN KGLMYEELDR TDKISIGEVA DTCPLEDPVL LDGKPPALVS SDDSGKARSC  240
GDCSPRSSFP AKQDDVNVVS RDDDENSSGC THPSPIKRPF RPTPRIGDRR IRKILASKYW  300
KVAPRLKDVT FSNSDENVKP ACCGRNSTYK RLRSERNYPF KKRKFLHCSS VSSSAGGISN  360
EGISDSPEKS INGNASGVYS KMHGGTGESS SLADQRKSFH SMDSHVKLRI KSFRVPELFI  420
EIPESATVGS LKRTVMEAVT AILGGGLHVG VLLQGKKVRD DNKTLLQTGI SRDNQMDALG  480
FSLEPNPSQT SPLLCRGGSP LTLPCDSPLP LARYPTTPRL ANQVICDPSP LPHMANLGNF  540
VESDHDSAPS PTDMSLEKST TDSKALVAVP AMSVEALAVV PAHRKSKRSE VVQRRIRRPF  600
SVAEVEALVQ AVEKLGTGRW RDVKLRAFDN AKHRTYVDLK DKWKTLVHTA RISPQQRRGE  660
PVPQELLDRV LTAHAYWSQQ QAKQQLKPQQ PETCLLLYNS TIRGGSTCDV VEKTLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-585816881108Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007016385.20.0PREDICTED: telomere repeat-binding protein 5
SwissprotQ6R0E30.0TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A061H0170.0A0A061H017_THECC; TRF-like 2, putative isoform 1
STRINGEOY340040.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32402539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-159TRF-like 2
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]