PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG041605t1
Common NameTCM_041605
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C3H
Protein Properties Length: 710aa    MW: 76760.1 Da    PI: 5.6981
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG041605t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21.1e-06279299526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       +C+ f++ G C+ Gd+C +aHg
  Thecc1EG041605t1 279 PCPEFRK-GSCRQGDNCEYAHG 299
                       8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484034.35E-1551150IPR020683Ankyrin repeat-containing domain
PfamPF127964.5E-871144IPR020683Ankyrin repeat-containing domain
SMARTSM002480.02975105IPR002110Ankyrin repeat
PROSITE profilePS5029716.57375150IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.209.6E-1676174IPR020683Ankyrin repeat-containing domain
CDDcd002043.69E-1477173No hitNo description
SMARTSM002488.1E-5110142IPR002110Ankyrin repeat
PROSITE profilePS5008813.384110145IPR002110Ankyrin repeat
PRINTSPR014158.0E-5111126IPR002110Ankyrin repeat
PRINTSPR014158.0E-5129143IPR002110Ankyrin repeat
SMARTSM002484400152181IPR002110Ankyrin repeat
SMARTSM003565.0E-5274300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-4278301IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-4279299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.094279301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-4307337IPR000571Zinc finger, CCCH-type
SMARTSM0035620309332IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.221309333IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MCSGSKRKPT QTGFVMEGES HKEDMLPQKF SVLLEFSASN DLIGFKSAIE EEGHDIDEPS  60
LWYGRRIGLK KMGFEERTPL LIASMFGSKD VVNYIIGSGR VDVNRACGSD GATALHCAAA  120
GGSFDSAEVV KILLDASADI NSVDANGNRP GDLITPACNS AFSLRKKMLE ALLRGSGSVG  180
EMEALPAQKG NEMEGQEQQD NSIARVLKDG TEKKEYPVDL TLPDIKNGIY GTDEFRMYTF  240
KVKPCSRAYS HDWTECPFVH PGENARRRDP RKYHYSCVPC PEFRKGSCRQ GDNCEYAHGI  300
FECWLHPAQY RTRLCKDETN CSRRVCFFAH KPEELRPLYA STGSAVPSPR SYAANGSSLD  360
MGSMSPLALG SPSVMIPPTS TPPLTPTGTS SPMGGAMWPN QLSIVPPTLQ LPGSRLKTAL  420
SARDMDLDME LLGLESHRRR QQQQLIDEIS GLSSPTSWNN PLSSASAFSA TGDRTGELNR  480
FGGVKPTNLE DIFGSLDTTI LPQLQGISLD GTAPQLQSPT GVQMRQNINQ QLRASYPTNL  540
ASSPVRASPS FGIDASSGPT AAAVLSSRSA AFAKRSQSFI ERTAVNRHAG FSSPTSSASA  600
MPSNLSDWGS PDGKLDWGIQ GEELSKLRKS ASFGFRSSGS NLANAAPSML PTADEPDVSW  660
VQSLVKDTPS AGQFGFDEEQ QQCHLNSGGA EMLPAWVEQL YMEQEQMVA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007016084.20.0PREDICTED: zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A061GWD40.0A0A061GWD4_THECC; Zinc finger family protein
STRINGEOY337030.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]