PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG041332t2

Common Name

TCM_041332

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NAC

Protein Properties

Length: 386aa MW: 43260.5 Da PI: 6.0322

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG041332t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	159.3	1.5e-49	19	145	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 + pGfrF+Ptd el+++yLkkk++g + + evi+e++i+++ePwdLp k+v ++++ew+fF+ r +ky++g++++rat++gyWkatgk+++v Thecc1EG041332t2 19 MFPGFRFSPTDVELISYYLKKKLDGYDKCV-EVISEIEICRHEPWDLPaKSVIKSDNEWFFFCARGRKYPNGSQSRRATEQGYWKATGKERNV 110 579*********************9777.99***********667777899******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +s +++++g+k+tLvf+ grapkge+t+W+mhey + Thecc1EG041332t2 111 KS-GSNVIGTKRTLVFHMGRAPKGERTEWIMHEYCM 145 .99*****************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.28E-53	10	151	IPR003441	NAC domain
PROSITE profile	PS51005	48.71	19	164	IPR003441	NAC domain
Pfam	PF02365	4.7E-25	21	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009626	Biological Process	plant-type hypersensitive response
GO:0009910	Biological Process	negative regulation of flower development
GO:0034976	Biological Process	response to endoplasmic reticulum stress
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005783	Cellular Component	endoplasmic reticulum
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MAGEGVSRET QMSIEASSMF PGFRFSPTDV ELISYYLKKK LDGYDKCVEV ISEIEICRHE 60 PWDLPAKSVI KSDNEWFFFC ARGRKYPNGS QSRRATEQGY WKATGKERNV KSGSNVIGTK 120 RTLVFHMGRA PKGERTEWIM HEYCMNGKSQ ASRNQQELST MHDSRATSDG GTDQTGMSEG 180 DKAVEFYSKK VTSSYDSHSI EQIDSASESE EKHSNDVAPT ESSTPQKDSD GEEDYFAEIL 240 KDDIIKLDET SLSAMPPDSL SMVASTSDTE RRTQQPRQEN VPNASPFQGT ASRRIKLWRP 300 KGDILCDAAS GSLVRELAVE KQSSPKIEES PKCLLSIFSP RTANLRLIYA SFVILTLLAL 360 FLSLIGDSKP VKDFKYAAFY KNFWQ*

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MAGEGVSRET QMSIEASSMF PGFRFSPTDV ELISYYLKKK LDGYDKCVEV ISEIEICRHE  60
PWDLPAKSVI KSDNEWFFFC ARGRKYPNGS QSRRATEQGY WKATGKERNV KSGSNVIGTK  120
RTLVFHMGRA PKGERTEWIM HEYCMNGKSQ ASRNQQELST MHDSRATSDG GTDQTGMSEG  180
DKAVEFYSKK VTSSYDSHSI EQIDSASESE EKHSNDVAPT ESSTPQKDSD GEEDYFAEIL  240
KDDIIKLDET SLSAMPPDSL SMVASTSDTE RRTQQPRQEN VPNASPFQGT ASRRIKLWRP  300
KGDILCDAAS GSLVRELAVE KQSSPKIEES PKCLLSIFSP RTANLRLIYA SFVILTLLAL  360
FLSLIGDSKP VKDFKYAAFY KNFWQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-39	18	143	16	140	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-39	18	143	16	140	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-39	18	143	16	140	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-39	18	143	16	140	NO APICAL MERISTEM PROTEIN
3swm_A	1e-39	18	143	19	143	NAC domain-containing protein 19
3swm_B	1e-39	18	143	19	143	NAC domain-containing protein 19
3swm_C	1e-39	18	143	19	143	NAC domain-containing protein 19
3swm_D	1e-39	18	143	19	143	NAC domain-containing protein 19
3swp_A	1e-39	18	143	19	143	NAC domain-containing protein 19
3swp_B	1e-39	18	143	19	143	NAC domain-containing protein 19
3swp_C	1e-39	18	143	19	143	NAC domain-containing protein 19
3swp_D	1e-39	18	143	19	143	NAC domain-containing protein 19
4dul_A	1e-39	18	143	16	140	NAC domain-containing protein 19
4dul_B	1e-39	18	143	16	140	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847239	1e-161	KC847239.1 Gossypium hirsutum NAC domain protein NAC62 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007015733.2	0.0	PREDICTED: NAC domain-containing protein 89
TrEMBL	A0A061GVB5	0.0	A0A061GVB5_THECC; NAC domain-containing protein 74, putative isoform 2
STRING	EOY33354	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22290.1	3e-82	NAC domain containing protein 89

Link Out ? help Back to Top
Phytozome	Thecc1EG041332t2
Entrez Gene	18590257

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]