PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG041175t1 | ||||||||
Common Name | TCM_041175 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | YABBY | ||||||||
Protein Properties | Length: 183aa MW: 20357 Da PI: 8.2262 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 231.8 | 1.6e-71 | 2 | 157 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94 +++ sse+vCyv+CnfCntilavsvP tslf++vtvrCGhC++llsvn+ ++ q+++ ++ ke++ ++ ++++++ ++s+ + Thecc1EG041175t1 2 SLDLSSERVCYVHCNFCNTILAVSVPCTSLFNIVTVRCGHCANLLSVNMGTSLQTVPIQDA----QKEQINTDQDHSNKECG-----SSSKCN 85 56789****************************************************9996....33333333333332222.....222223 PP YABBY 95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + s+ ++ ++e+pr+pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Thecc1EG041175t1 86 KFSA---FDSAEHEAPRMPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 157 3333...3567899***999.9****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.8E-75 | 6 | 157 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.96E-8 | 101 | 150 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.5E-5 | 105 | 151 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MSLDLSSERV CYVHCNFCNT ILAVSVPCTS LFNIVTVRCG HCANLLSVNM GTSLQTVPIQ 60 DAQKEQINTD QDHSNKECGS SSKCNKFSAF DSAEHEAPRM PPIRPPEKRQ RVPSAYNRFI 120 KEEIQRIKAS NPDISHREAF STAAKNWAHF PHIHFGLKLD GNKQAKLDQA FAEGTQKSTG 180 FY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007015607.1 | 1e-136 | PREDICTED: putative axial regulator YABBY 2 | ||||
Swissprot | Q9XFB0 | 3e-85 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A061GUT1 | 1e-135 | A0A061GUT1_THECC; Plant-specific transcription factor YABBY family protein isoform 1 | ||||
STRING | EOY33226 | 1e-136 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5581 | 27 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 1e-87 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG041175t1 |
Entrez Gene | 18590164 |
Publications ? help Back to Top | |||
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