PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG041094t1 | ||||||||
Common Name | TCM_041094 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | LBD | ||||||||
Protein Properties | Length: 218aa MW: 23467.6 Da PI: 5.2087 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.7 | 8.2e-43 | 55 | 154 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q+++l+a+ Thecc1EG041094t1 55 PCAACKILRRRCADKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVNELQAQ 147 7******************************************************************************************** PP DUF260 94 lallkee 100 la++++e Thecc1EG041094t1 148 LAKAQAE 154 **99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.134 | 54 | 155 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.2E-43 | 55 | 152 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MFKMEYTEAT PPPPPTTTTT TSSPQSLSPN SSNSSSSPPP PPPTTTSTPP VVISPCAACK 60 ILRRRCADKC VLAPYFPPTE PAKFTIAHRV FGASNIIKFL QELPESQRAD AVSSMVYEAS 120 ARIRDPVYGC AGAICQLQKQ VNELQAQLAK AQAEVVNMQL QQANLVALLC VEMAQSPQPN 180 SQQSVDTFIS SPPSYQSNPG FLEDNNNLGS LWEPLWT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-42 | 48 | 157 | 4 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-42 | 48 | 157 | 4 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007015486.2 | 1e-124 | PREDICTED: LOB domain-containing protein 1 | ||||
Swissprot | Q9SK08 | 3e-79 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | A0A061GTD1 | 1e-155 | A0A061GTD1_THECC; LOB domain-containing protein 1 | ||||
STRING | EOY33105 | 1e-156 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1141 | 28 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 7e-73 | LOB domain-containing protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG041094t1 |
Entrez Gene | 18590099 |
Publications ? help Back to Top | |||
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