PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG040945t2 | ||||||||
Common Name | TCM_040945 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 518aa MW: 58251.4 Da PI: 6.9955 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.6 | 2.1e-18 | 20 | 75 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kRt t+ q+ +Le++++++r ps e++++LA++++Lte+q++ WF+ rR k+k+ Thecc1EG040945t2 20 KKRTVKTPAQVMALENFYKEHRFPSDEMKAQLAAQIRLTEKQISSWFCHRRLKDKR 75 8*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.1E-19 | 4 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.293 | 16 | 76 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.55E-17 | 16 | 76 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 6.2E-18 | 18 | 80 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.6E-16 | 20 | 75 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.21E-17 | 20 | 76 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 51 | 74 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 518 aa Download sequence Send to blast |
MEDSAEVQTE ENKVSLDVNK KRTVKTPAQV MALENFYKEH RFPSDEMKAQ LAAQIRLTEK 60 QISSWFCHRR LKDKRRDESY ANGRQDHSSG VIQDRGSGLR QDSCGSIKQG DYRNVDPREV 120 ESRRIYGHDF PVADLTYERR SHQNPYNAHM EDTSSESSSS LHDQRFSESR DPYDMQISAN 180 LTQNGAITQI KPRIVKSMGY KPSGYLKVKG EMENPAVTAV KRQLGSHYQE DGPLLGIEFD 240 PLPPGAFEFR SSNLVNEPIY VGDPRQEHSP DISGVIKQPN LNIINEVHNP KMSSQASYME 300 DANLNTEHGS DRQDRKSHHQ LKYKSSFLCS NPFPGQNSSI NVYESSAGKT AVSDCKRSRM 360 SFKPAVERMG SDSFSNQPGP YGSKIANEQE KPWLHDDDNH TYKAPKNENL SKTSDLIHGC 420 SESLGTERGP SARMGKLEKL GGEWKPKREY PVRENIDPTN ELKVAKRVKV EFPQQNFVAN 480 ASHSRSLLLT NPTKGSSMDV PSSFSEDETA ETSSSLD* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 68 | 76 | RRLKDKRRD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007015308.2 | 0.0 | PREDICTED: uncharacterized protein LOC18589998 | ||||
TrEMBL | A0A061GUR5 | 0.0 | A0A061GUR5_THECC; Homeodomain-like superfamily protein, putative isoform 2 | ||||
STRING | EOY32926 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G03250.1 | 4e-95 | HB-other family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG040945t2 |
Entrez Gene | 18589998 |
Publications ? help Back to Top | |||
---|---|---|---|
|