PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG040941t3

Common Name

TCM_040941

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

SRS

Protein Properties

Length: 431aa MW: 44362.8 Da PI: 8.1908

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG040941t3	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	221	2.5e-68	211	369	4	153
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaes 96 +++CqdCGnqakkdC+h+RCRtCCksrgfdC thvkstWv+aa+rrerq + aaa++ a +s +++ +k++r +++++++s+t++s++++ Thecc1EG040941t3 211 SGTTCQDCGNQAKKDCTHRRCRTCCKSRGFDCPTHVKSTWVSAARRRERQLMVAAATAGAGSSGSTSGAKKPRLI-TSQTTTTSHTSTSNTTP 302 5679*******************************************************999****986.88899999***** PP DUF702 97 kkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +++++tss lP +v+++avf+cvrv++v+dge+e+aYq++v+igGhvfkG+LydqG+e Thecc1EG040941t3 303 PRSFDTSSshqdagfkesLPGQVRAPAVFKCVRVTAVEDGEDEYAYQAVVKIGGHVFKGFLYDQGVE 369 **999******************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.1E-62	212	369	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.1E-26	214	256	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	7.3E-30	321	368	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
NFVIIIVIVA TTRRQLPSDS GAFADWATSS STAIRAGPDD LSLGFNANAA AAAAAPGSTT 60 AQWPPSARQI NYGLSHEMGM VGLRDVFVVA PASSFNHHHH HHHHHTQDPI MANDQINGQN 120 AATALGVGVI PLLTATPCLA SQNVEDSDLL SNNGRNKLSG MQLWQNQNSS SHYLKKPSSV 180 PDNNNSSSMN LIQSSGGGGM GGGSGGSGSS SGTTCQDCGN QAKKDCTHRR CRTCCKSRGF 240 DCPTHVKSTW VSAARRRERQ LMVAAATAGA GSSGSTSGAK KPRLITSQTT TTSHTSTSNT 300 TPPRSFDTSS SHQDAGFKES LPGQVRAPAV FKCVRVTAVE DGEDEYAYQA VVKIGGHVFK 360 GFLYDQGVEG RDGFPNISEL HLGGGGGGGN GGGSGRHGGS SSSPVLDPSE VYAATGGGLL 420 AGSSYGNPIN *

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

NFVIIIVIVA TTRRQLPSDS GAFADWATSS STAIRAGPDD LSLGFNANAA AAAAAPGSTT  60
AQWPPSARQI NYGLSHEMGM VGLRDVFVVA PASSFNHHHH HHHHHTQDPI MANDQINGQN  120
AATALGVGVI PLLTATPCLA SQNVEDSDLL SNNGRNKLSG MQLWQNQNSS SHYLKKPSSV  180
PDNNNSSSMN LIQSSGGGGM GGGSGGSGSS SGTTCQDCGN QAKKDCTHRR CRTCCKSRGF  240
DCPTHVKSTW VSAARRRERQ LMVAAATAGA GSSGSTSGAK KPRLITSQTT TTSHTSTSNT  300
TPPRSFDTSS SHQDAGFKES LPGQVRAPAV FKCVRVTAVE DGEDEYAYQA VVKIGGHVFK  360
GFLYDQGVEG RDGFPNISEL HLGGGGGGGN GGGSGRHGGS SSSPVLDPSE VYAATGGGLL  420
AGSSYGNPIN *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012435560.1	0.0	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
Swissprot	Q94CK9	3e-97	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A061GZE9	0.0	A0A061GZE9_THECC; Lateral root primordium protein-related isoform 3 (Fragment)
STRING	EOY32912	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.4	2e-96	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Thecc1EG040941t3
Entrez Gene	18589994

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]