PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG040941t1

Common Name

TCM_040941

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

SRS

Protein Properties

Length: 434aa MW: 44896.5 Da PI: 8.1896

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG040941t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	221	2.5e-68	214	372	4	153
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaes 96 +++CqdCGnqakkdC+h+RCRtCCksrgfdC thvkstWv+aa+rrerq + aaa++ a +s +++ +k++r +++++++s+t++s++++ Thecc1EG040941t1 214 SGTTCQDCGNQAKKDCTHRRCRTCCKSRGFDCPTHVKSTWVSAARRRERQLMVAAATAGAGSSGSTSGAKKPRLI-TSQTTTTSHTSTSNTTP 305 5679*******************************************************999****986.88899999***** PP DUF702 97 kkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +++++tss lP +v+++avf+cvrv++v+dge+e+aYq++v+igGhvfkG+LydqG+e Thecc1EG040941t1 306 PRSFDTSSshqdagfkesLPGQVRAPAVFKCVRVTAVEDGEDEYAYQAVVKIGGHVFKGFLYDQGVE 372 **999******************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.2E-62	215	372	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.1E-26	217	259	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	7.3E-30	324	371	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MMTAMMMVMK TEQDWKRKLP SDSGAFADWA TSSSTAIRAG PDDLSLGFNA NAAAAAAAPG 60 STTAQWPPSA RQINYGLSHE MGMVGLRDVF VVAPASSFNH HHHHHHHHTQ DPIMANDQIN 120 GQNAATALGV GVIPLLTATP CLASQNVEDS DLLSNNGRNK LSGMQLWQNQ NSSSHYLKKP 180 SSVPDNNNSS SMNLIQSSGG GGMGGGSGGS GSSSGTTCQD CGNQAKKDCT HRRCRTCCKS 240 RGFDCPTHVK STWVSAARRR ERQLMVAAAT AGAGSSGSTS GAKKPRLITS QTTTTSHTST 300 SNTTPPRSFD TSSSHQDAGF KESLPGQVRA PAVFKCVRVT AVEDGEDEYA YQAVVKIGGH 360 VFKGFLYDQG VEGRDGFPNI SELHLGGGGG GGNGGGSGRH GGSSSSPVLD PSEVYAATGG 420 GLLAGSSYGN PIN*

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MMTAMMMVMK TEQDWKRKLP SDSGAFADWA TSSSTAIRAG PDDLSLGFNA NAAAAAAAPG  60
STTAQWPPSA RQINYGLSHE MGMVGLRDVF VVAPASSFNH HHHHHHHHTQ DPIMANDQIN  120
GQNAATALGV GVIPLLTATP CLASQNVEDS DLLSNNGRNK LSGMQLWQNQ NSSSHYLKKP  180
SSVPDNNNSS SMNLIQSSGG GGMGGGSGGS GSSSGTTCQD CGNQAKKDCT HRRCRTCCKS  240
RGFDCPTHVK STWVSAARRR ERQLMVAAAT AGAGSSGSTS GAKKPRLITS QTTTTSHTST  300
SNTTPPRSFD TSSSHQDAGF KESLPGQVRA PAVFKCVRVT AVEDGEDEYA YQAVVKIGGH  360
VFKGFLYDQG VEGRDGFPNI SELHLGGGGG GGNGGGSGRH GGSSSSPVLD PSEVYAATGG  420
GLLAGSSYGN PIN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012435560.1	0.0	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
Refseq	XP_012483072.1	0.0	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
Swissprot	Q94CK9	2e-97	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A061GUQ3	0.0	A0A061GUQ3_THECC; Lateral root primordium protein-related isoform 1
STRING	EOY32912	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5883	26	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.4	1e-94	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Thecc1EG040941t1
Entrez Gene	18589994

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]