PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG040564t4 | ||||||||
Common Name | TCM_040564 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bHLH | ||||||||
Protein Properties | Length: 211aa MW: 23304.1 Da PI: 8.2249 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.6 | 4.4e-13 | 154 | 199 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L++l+P+ +k + a++L +Av+YIk+Lq Thecc1EG040564t4 154 SIAERVRRTKISERMRKLQDLVPNM----DKQTNTADMLDLAVDYIKDLQ 199 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.288 | 148 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.1E-16 | 151 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.49E-13 | 152 | 203 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.9E-16 | 153 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.9E-14 | 154 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.2E-10 | 154 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MGDYGGVNNS NREASFPSAS RPPPSGLMSP IAEMGNKNVV PNSSENAGFG ENRHNNYSSG 60 FPVTSWEDSM MISDNMPGVK RLREDDRSLS GLDLDGAETQ NTDAGNRPPP ILAHHLSLPK 120 SSAEMSAIDK FLQYQDSVPC KIRAKRGCAT HPRSIAERVR RTKISERMRK LQDLVPNMDK 180 QTNTADMLDL AVDYIKDLQN QVKTLSDNRA K |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00646 | PBM | Transfer from LOC_Os08g39630 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007014950.2 | 1e-154 | PREDICTED: transcription factor bHLH122 isoform X2 | ||||
Swissprot | Q66GR3 | 7e-61 | BH130_ARATH; Transcription factor bHLH130 | ||||
TrEMBL | A0A061GST1 | 1e-155 | A0A061GST1_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 4 (Fragment) | ||||
TrEMBL | A0A061GZ59 | 1e-153 | A0A061GZ59_THECC; DNA binding protein, putative isoform 2 | ||||
STRING | EOY32568 | 1e-154 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 5e-59 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG040564t4 |
Entrez Gene | 18589770 |
Publications ? help Back to Top | |||
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