PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG040405t2
Common NameTCM_040405
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB_related
Protein Properties Length: 624aa    MW: 69328.2 Da    PI: 10.2652
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG040405t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.21.1e-091044236
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
   Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRt 36
                      ++W t E++ll++av+++G+++W++Ia +++++Rt
  Thecc1EG040405t2 10 QPWGTLEELLLACAVNRHGTKSWDSIALELQNRRT 44
                      79*****************************6666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-5743IPR009057Homeodomain-like
SMARTSM007171.1E-5863IPR001005SANT/Myb domain
SuperFamilySSF466895.04E-61081IPR009057Homeodomain-like
PfamPF002496.4E-91044IPR001005SANT/Myb domain
CDDcd001671.62E-51161No hitNo description
SMARTSM002972.7E-10270379IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.0E-12278398IPR001487Bromodomain
CDDcd043698.28E-13279374No hitNo description
SuperFamilySSF473704.71E-15281384IPR001487Bromodomain
PROSITE profilePS5001410.801289360IPR001487Bromodomain
PfamPF004399.8E-9290364IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MAREHETSAQ PWGTLEELLL ACAVNRHGTK SWDSIALELQ NRRTSSSFTP QLCKDKFFDL  60
KRRFISPNDA ASSSSLVDQL RRIRVEELRR EVQRRDVSIV SLELKVKRLV EERDRSLKEE  120
ADLDDRLNKP APDIIAGEPA AGDDSGDLDD RSFNESNSTS QKPEEATTTT VIVKDEQNDV  180
EAVEEVGGEK KAQVKTESVG PGTGNEPDPV RTGKGPGSER VNGEERDNKK QTSDVQSSAS  240
LSKKKRRRFT SGDGSSSAEE REGDEVSPAM KRALAVKPES LVRLLGIIRS HRLGSAFGRC  300
QRSQESERYK ILVRQHMDLE RIESRLDEGV YSDCSAKFFR DLLLLFNNII IFHRKNSPEH  360
IAAQELRALV LKEISDELRK QPPQPANLKP GLDQPPESLP KPNKSSTIVA CNKRSSIKAL  420
TQNASRRGDK KERKVEEKPK ATEKKVNTSY FSGIDDNGIR KKRSKERAVS GRRNSLRTSS  480
KSGETKHEYG GNELSSHDAL ELKVDKKENM ARKKESAASF LKRMKQNSPS EATDDEDGDD  540
DSEGGSKDGK EEKGRGRKRD VKRVTRSSGG RGAREESGRV KRGVGRPPKR AAAAESTAKR  600
GRDNAENEVG VGGGGRARKR SRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242247KKKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007014844.20.0PREDICTED: uncharacterized protein LOC18589698
TrEMBLA0A061GSR20.0A0A061GSR2_THECC; DNA-binding bromodomain-containing protein, putative isoform 1
STRINGEOY324630.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.16e-41DNA-binding bromodomain-containing protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]