PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG040405t1 | ||||||||
Common Name | TCM_040405 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | MYB_related | ||||||||
Protein Properties | Length: 624aa MW: 69328.2 Da PI: 10.2652 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.2 | 1.1e-09 | 10 | 44 | 2 | 36 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRt 36 ++W t E++ll++av+++G+++W++Ia +++++Rt Thecc1EG040405t1 10 QPWGTLEELLLACAVNRHGTKSWDSIALELQNRRT 44 79*****************************6666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-5 | 7 | 43 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-5 | 8 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.04E-6 | 10 | 81 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.4E-9 | 10 | 44 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.62E-5 | 11 | 61 | No hit | No description |
SMART | SM00297 | 2.7E-10 | 270 | 379 | IPR001487 | Bromodomain |
Gene3D | G3DSA:1.20.920.10 | 2.0E-12 | 278 | 398 | IPR001487 | Bromodomain |
CDD | cd04369 | 8.28E-13 | 279 | 374 | No hit | No description |
SuperFamily | SSF47370 | 4.71E-15 | 281 | 384 | IPR001487 | Bromodomain |
PROSITE profile | PS50014 | 10.801 | 289 | 360 | IPR001487 | Bromodomain |
Pfam | PF00439 | 9.8E-9 | 290 | 364 | IPR001487 | Bromodomain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 624 aa Download sequence Send to blast |
MAREHETSAQ PWGTLEELLL ACAVNRHGTK SWDSIALELQ NRRTSSSFTP QLCKDKFFDL 60 KRRFISPNDA ASSSSLVDQL RRIRVEELRR EVQRRDVSIV SLELKVKRLV EERDRSLKEE 120 ADLDDRLNKP APDIIAGEPA AGDDSGDLDD RSFNESNSTS QKPEEATTTT VIVKDEQNDV 180 EAVEEVGGEK KAQVKTESVG PGTGNEPDPV RTGKGPGSER VNGEERDNKK QTSDVQSSAS 240 LSKKKRRRFT SGDGSSSAEE REGDEVSPAM KRALAVKPES LVRLLGIIRS HRLGSAFGRC 300 QRSQESERYK ILVRQHMDLE RIESRLDEGV YSDCSAKFFR DLLLLFNNII IFHRKNSPEH 360 IAAQELRALV LKEISDELRK QPPQPANLKP GLDQPPESLP KPNKSSTIVA CNKRSSIKAL 420 TQNASRRGDK KERKVEEKPK ATEKKVNTSY FSGIDDNGIR KKRSKERAVS GRRNSLRTSS 480 KSGETKHEYG GNELSSHDAL ELKVDKKENM ARKKESAASF LKRMKQNSPS EATDDEDGDD 540 DSEGGSKDGK EEKGRGRKRD VKRVTRSSGG RGAREESGRV KRGVGRPPKR AAAAESTAKR 600 GRDNAENEVG VGGGGRARKR SRR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 242 | 247 | KKKRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007014844.2 | 0.0 | PREDICTED: uncharacterized protein LOC18589698 | ||||
TrEMBL | A0A061GSR2 | 0.0 | A0A061GSR2_THECC; DNA-binding bromodomain-containing protein, putative isoform 1 | ||||
STRING | EOY32463 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17089 | 7 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57980.1 | 6e-41 | DNA-binding bromodomain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG040405t1 |
Entrez Gene | 18589698 |
Publications ? help Back to Top | |||
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