PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG039715t1 | ||||||||
Common Name | TCM_039715 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | ARF | ||||||||
Protein Properties | Length: 1118aa MW: 123624 Da PI: 6.6177 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 70.8 | 1.7e-22 | 137 | 238 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++ Thecc1EG039715t1 137 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RD 226 99*****************************9445444.38************************************************..56 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++++l+++++r+ Thecc1EG039715t1 227 EKQQLLLGIRRA 238 88889****997 PP | |||||||
2 | Auxin_resp | 121.5 | 6.5e-40 | 263 | 346 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFv++++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++gvsdldpvrW+nS+Wr+L+ Thecc1EG039715t1 263 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVYnNQISPGMRFRMMFETEESGTRRYMGTITGVSDLDPVRWKNSQWRNLQ 346 79********************************98799*******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.19E-43 | 128 | 266 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.0E-41 | 129 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.21E-19 | 136 | 228 | No hit | No description |
PROSITE profile | PS50863 | 11.97 | 137 | 239 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-20 | 137 | 238 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.1E-23 | 137 | 239 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.9E-35 | 263 | 346 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 26.211 | 1005 | 1089 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.06E-6 | 1018 | 1083 | No hit | No description |
Pfam | PF02309 | 9.8E-6 | 1053 | 1090 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1118 aa Download sequence Send to blast |
MKMPANGAGA AANVAAPSAA EGGAPEKKSI NPELWQACAG PLVNLPAAGT HVVYFPQGHS 60 EQVAASMKKD VDAQIPNYPN LPSKLLCLLH NVTLHADPET DEVYAQMTLQ PVSAFDKEAL 120 LRSDLSLKAN KPQPEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFSM QPPAQELVAR 180 DLHDNVWTFR HIYRGQPKRH LLTTGWSLFV SGKRLFAGDS VLFIRDEKQQ LLLGIRRANR 240 QPTNLSSSVL SSDSMHIGIL AAAAHAAANN SPFTVFYNPR ASPSEFVIPL AKYYKAVYNN 300 QISPGMRFRM MFETEESGTR RYMGTITGVS DLDPVRWKNS QWRNLQVGWD ESTAGERRNR 360 VSIWEIEPVT APFFICPPPF FRSKRPRQPG IPDDESSDLD NLFKRSMPWL GDDICMKESQ 420 APGLSLVQWM NMQQNSMLAN SMQPNFMQSL SGSVMQNFAG ADLSRQMGLS APQMPQPNNL 480 QFNTQRLPQQ VQQLDQLPKL PSTMNPLGSI MQPQQLSDMT QQSRQNLIAQ TLPSSQVQAQ 540 VLQPQTLVQS NNILHQQQSS IQTHQLPRSL PQNLQQQQQQ QQQQHLMGPN QQQNVMQCPL 600 PDPVNQHLQM PDNQIQFQLL QKLQQQQQSL LAQQSVLQQP AQLAQTQEQQ RQVLDASQSF 660 SRSVTTSQVL ELPPMTPILP PQSNVVSQQT SKHNSHANVR FDQPPLQSKL QQQQQQHGML 720 PEIPGHVGHS PAPTANHLFT AVSSVMTGAA VAAQSVVTDD NPSCSTSPST NCPNVLQPMI 780 NSRVHRSTGL GEDMAQSAAT VLNPNALETM SSNANLIKEL QQKSDVKPSF NISKSQNQGL 840 FAPQTYINGA TAQADYLDTS SSTTSVCLSH NDVNLQQNNS LTYNPQTLLL RDTSQDGEDQ 900 ADPRNNSSYG PNMDGQIGMP MNSDSLLTKG MMGLGKDFSN NLSSGGMLTS YENPKDAQQE 960 LSSSMVSQSF GVPDMTFNSI DSTINDSSFL NRGAWAPPPQ FQRMRTYTKV YKRGAVGRSI 1020 DITRYSGYDE LKQDLARRFG IEGQLEDRGR IGWKLVYVDH EKDVLLVGDD PWEEFVNCVR 1080 CIKILSPQEV QQMSLDGDFG NSVLPNQACS SSDNGNT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-168 | 26 | 367 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007014531.2 | 0.0 | PREDICTED: auxin response factor 19 | ||||
TrEMBL | A0A061GQQ5 | 0.0 | A0A061GQQ5_THECC; Auxin response factor | ||||
STRING | EOY32150 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16229 | 10 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG039715t1 |
Entrez Gene | 18589484 |
Publications ? help Back to Top | |||
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