PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG039448t1 | ||||||||
Common Name | TCM_039448 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | HB-PHD | ||||||||
Protein Properties | Length: 744aa MW: 83729.9 Da PI: 10.0152 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 33.1 | 9.4e-11 | 518 | 562 | 9 | 53 |
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++ +e L ++F++n ps+ +e L+k+lgL+ ++V WF+N R+ Thecc1EG039448t1 518 PTAVEKLRQVFAENELPSRVIKENLSKELGLEPEKVNKWFKNARY 562 67899**************************************97 PP | |||||||
2 | PHD | 34.8 | 3.7e-12 | 253 | 308 | 1 | 51 |
SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ + ++++vlCd +C+ +fH+kCl+++l++e++p g w+C+ C++k Thecc1EG039448t1 253 FCAKCKLheAFPDNDIVLCDgTCNCAFHQKCLDPPLDTENIPPGeqGWFCKFCDCK 308 699999854445********56********************9999*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 3.77E-13 | 245 | 311 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 6.4E-11 | 249 | 308 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 10.14 | 251 | 308 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 2.8E-7 | 253 | 306 | IPR001965 | Zinc finger, PHD-type |
CDD | cd15504 | 2.77E-31 | 253 | 305 | No hit | No description |
Pfam | PF00628 | 2.2E-9 | 253 | 308 | IPR019787 | Zinc finger, PHD-finger |
PROSITE pattern | PS01359 | 0 | 254 | 305 | IPR019786 | Zinc finger, PHD-type, conserved site |
SuperFamily | SSF46689 | 5.13E-11 | 502 | 562 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-13 | 503 | 561 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.536 | 507 | 567 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.8E-11 | 509 | 571 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.01E-9 | 510 | 569 | No hit | No description |
Pfam | PF00046 | 3.0E-8 | 518 | 562 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 744 aa Download sequence Send to blast |
MRTVATSFSF DTAEISMRGT GKKVVDHESA KSSSSKKEAG SKLIATLQFK KRSKISHGRV 60 RKPKYHVKKV GSALLKTKVN ASISKGTGND VSSSKKVGTK TNLHKANKKG SSKKLDSCKL 120 QGKNAASGSS EENSKKANED VRIKNLTKKK KKRQKDKVEL DEASRLQRRT RYLLIKMKLE 180 QNLIDAYSGE GWKGQSREKI KPEKELQRAK KQILKCKLGI REAIRQLDSL SSVGSIEGSV 240 IAPDGSVYHE HIFCAKCKLH EAFPDNDIVL CDGTCNCAFH QKCLDPPLDT ENIPPGEQGW 300 FCKFCDCKME IIEAMNAHIG THFSVDSHWQ DIFKDEAAFP DGVIASLNPE EEWPSDDSED 360 DDYDPERREN SCGISGAALD GDDTDDTDSS TSLSWSVDGE DFSGSGRREN HSVDSGADSY 420 ETSDGEIISG RRRRRAVDYK KLYDEMFGKD APSYEQVSED EDWGPGKRKR REKESDAAST 480 LMTLYESETK YPNVETTEMR GQLPSDPKSR RPIFRIPPTA VEKLRQVFAE NELPSRVIKE 540 NLSKELGLEP EKVNKWFKNA RYLALKSRKV ERADHLQSSS PGVSKESELE ASKRKDPNIP 600 QLEDTSKKTL LHTPKRLKKK VRKSPNSKSL HSSLRRSAQN GLSLVSPANS NKVRKELSDD 660 VILKKLLKGK KKREKKRVNI TVGGGLQQFE LEMERLCRVK VRLENMRQTL LRLETSKARK 720 LNKNRLQEES VIYIPIAEVK QKV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 467 | 472 | RKRREK |
2 | 614 | 622 | KRLKKKVRK |
3 | 615 | 621 | RLKKKVR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Specifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By pathogen infection. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007014416.2 | 0.0 | PREDICTED: pathogenesis-related homeodomain protein isoform X2 | ||||
Swissprot | P48785 | 1e-171 | PRH_ARATH; Pathogenesis-related homeodomain protein | ||||
TrEMBL | A0A061GQ97 | 0.0 | A0A061GQ97_THECC; Pathogenesis related homeodomain protein A, putative isoform 1 | ||||
STRING | EOY32036 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29940.2 | 1e-165 | pathogenesis related homeodomain protein A |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG039448t1 |
Entrez Gene | 18589398 |
Publications ? help Back to Top | |||
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