PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG038105t1 | ||||||||
Common Name | TCM_038105 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | YABBY | ||||||||
Protein Properties | Length: 185aa MW: 20786.6 Da PI: 8.0039 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 198.7 | 2.4e-61 | 6 | 157 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlk.snvekeesasts 95 + ++eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q l+ ++ ++ + ++++++ + +++++++ s Thecc1EG038105t1 6 DVAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDV--------QAPN--YATQDYRtELGSSSKCNKLS 88 5689********************************************99999998884........1112..12222220122222222222 PP YABBY 96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++ ++v++ v+rPPekr rvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Thecc1EG038105t1 89 MRT------PANNVTEERVVNRPPEKRPRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 157 222......222333334589****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.2E-69 | 8 | 157 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.45E-8 | 101 | 150 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 9.7E-5 | 106 | 151 | IPR009071 | High mobility group box domain |
CDD | cd01390 | 1.38E-5 | 108 | 147 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MSSCIDVAPE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAFQSLS 60 WQDVQAPNYA TQDYRTELGS SSKCNKLSMR TPANNVTEER VVNRPPEKRP RVPSAYNQFI 120 KEEIQRIKAN NPDISHREAF STAAKNWAHF PHIHFGLMLE TNNQNKLDDA SEKHLMSRTA 180 LLNK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007013479.2 | 1e-136 | PREDICTED: axial regulator YABBY 5 isoform X2 | ||||
Swissprot | Q8GW46 | 4e-88 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A061GNW0 | 1e-136 | A0A061GNW0_THECC; Plant-specific transcription factor YABBY family protein isoform 1 | ||||
STRING | EOY31098 | 1e-137 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5538 | 26 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 2e-90 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG038105t1 |
Entrez Gene | 18588779 |
Publications ? help Back to Top | |||
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