PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG038081t1
Common NameTCM_038081
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 201aa    MW: 22193 Da    PI: 7.6065
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG038081t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.8e-19554154
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                      ++++GVr+++ +g+Wv+eIr+p        +r++lg+f taeeAa+a+++a+  + 
  Thecc1EG038081t1  5 KKFRGVRQRH-WGSWVSEIRHP-----LlkRRVWLGTFETAEEAARAYDQAAILMS 54
                      59*******9.**********8.....334*********************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.68E-35565No hitNo description
Gene3DG3DSA:3.30.730.103.6E-33664IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-21665IPR016177DNA-binding domain
PROSITE profilePS5103221.944663IPR001471AP2/ERF domain
PfamPF008472.8E-12653IPR001471AP2/ERF domain
SMARTSM003802.1E-40669IPR001471AP2/ERF domain
PRINTSPR003671.2E-10718IPR001471AP2/ERF domain
PRINTSPR003671.2E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0010143Biological Processcutin biosynthetic process
GO:0010166Biological Processwax metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MVQSKKFRGV RQRHWGSWVS EIRHPLLKRR VWLGTFETAE EAARAYDQAA ILMSGRNAKT  60
NFPISQTPSG DPKAGTENSH SSPPNELSEL LHAKLRKCSK APSPSMTCLR LDTENSHIGV  120
WQKRAGESSD ANWVMTVQLE KGNAEMSANT LPSKSPGLAG PELRGEMDEE ERLALQMIDE  180
LLHRNCSSIG VQEGEGNLFL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-17264164ATERF1
3gcc_A9e-17264164ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017982162.11e-147PREDICTED: ethylene-responsive transcription factor WIN1
SwissprotQ9XI338e-74WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLA0A061GVB71e-146A0A061GVB7_THECC; Integrase-type DNA-binding superfamily protein
STRINGEOY310691e-147(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83428116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.13e-66ERF family protein
Publications ? help Back to Top
  1. Taketa S, et al.
    Barley grain with adhering hulls is controlled by an ERF family transcription factor gene regulating a lipid biosynthesis pathway.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(10): p. 4062-7
    [PMID:18316719]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Al-Abdallat AM,Al-Debei HS,Ayad JY,Hasan S
    Over-expression of SlSHN1 gene improves drought tolerance by increasing cuticular wax accumulation in tomato.
    Int J Mol Sci, 2014. 15(11): p. 19499-515
    [PMID:25350113]
  4. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  5. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]
  6. Sajeevan RS, et al.
    Expression of Arabidopsis SHN1 in Indian Mulberry (Morus indica L.) Increases Leaf Surface Wax Content and Reduces Post-harvest Water Loss.
    Front Plant Sci, 2017. 8: p. 418
    [PMID:28421085]