PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG037820t1 | ||||||||
Common Name | TCM_037820 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | B3 | ||||||||
Protein Properties | Length: 234aa MW: 26312.3 Da PI: 9.8886 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39.4 | 1.1e-12 | 112 | 212 | 1 | 92 |
EEEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkl 84 f+k+lt sdv s +rl+l k+ +++ +++++ ++ ++ +d +g+++ +++i + + + +vl++GW +F+ ++ L Dfv++ Thecc1EG037820t1 112 FEKQLTESDVKVSqCRLSLNKSDVQNAvmpllkkEEDSTDGIPVKTYDANGKEYPMTFITWSS-KFHVLKEGWMKFCTDHSLLaHQDFVTLWA 203 99*******98666**********655***9999777779999***************76666.59***************996789999876 PP -SS.SEE.. CS B3 85 dgr.sefel 92 ++ +++ l Thecc1EG037820t1 204 FRNlQTGDL 212 666555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-16 | 112 | 208 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.1E-8 | 112 | 218 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.61E-13 | 112 | 220 | No hit | No description |
SuperFamily | SSF101936 | 8.83E-15 | 112 | 210 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MDKSKGIENG YPEEYREQYL AALTVASFKY EKLSNETALA LNGLKTKIVR QVRAKRNKPK 60 ALKEPNPTGG SVNAQNLPGT PSLCLPLSSY FPPDIPPVAR LNGLIGRCSK PFEKQLTESD 120 VKVSQCRLSL NKSDVQNAVM PLLKKEEDST DGIPVKTYDA NGKEYPMTFI TWSSKFHVLK 180 EGWMKFCTDH SLLAHQDFVT LWAFRNLQTG DLSFVITSRR LEVFEAIKRK RLN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017982273.1 | 1e-173 | PREDICTED: putative B3 domain-containing protein At4g03160 | ||||
TrEMBL | A0A061GNJ5 | 1e-173 | A0A061GNJ5_THECC; B3 domain-containing protein, putative | ||||
STRING | EOY30697 | 1e-174 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2103 | 18 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03170.1 | 2e-22 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG037820t1 |
Entrez Gene | 18588543 |
Publications ? help Back to Top | |||
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