PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG037691t1

Common Name

TCM_037691

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

HRT-like

Protein Properties

Length: 588aa MW: 65197.9 Da PI: 9.6504

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG037691t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	55	1.4e-17	264	293	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCGv l dGs+C+r+P +gRKRC+eHKG++ Thecc1EG037691t1 264 ICGVVLVDGSICRRPPLEGRKRCAEHKGKK 293 8***************************98 PP
2	HRT-like	54.2	2.4e-17	354	384	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iC v+++dGs C+rqPv gRKRC eHKG++i Thecc1EG037691t1 354 ICEVAMDDGSLCTRQPVSGRKRCDEHKGRKI 384 8***************************997 PP
3	HRT-like	53.2	5e-17	443	473	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv ++G +C++qPv+gR RCeeHKG R+ Thecc1EG037691t1 443 ICGVEFGNGYFCTKQPVRGRVRCEEHKGLRV 473 8*****************************7 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 588 aa Download sequence Send to blast
MPMGATELAA VVTRLKREGH KRTKHDSQFS KWKVLIGPDD WVDYSIGKEG VARYRVENLP 60 KNSSSGLYEL AIYRSGSSSR ENTGKLDRYK VLVVYLGEAD NVRTRLQQYG RTGAHLGRSS 120 SGEKGCGYFE DIFSRGYSIV YRWAPMENKA DAQRTEAQLL NTFDYAWNKG SNGARRHDNI 180 LWKLDKGASN RTPPAIFSRK LLPFHQKQVG IKIKASKLLS QDSEFSKYSD GEGYNFLWQV 240 FKFSRSQPRL VFDRGGSNEN DTIICGVVLV DGSICRRPPL EGRKRCAEHK GKKTRGSSVS 300 LSTSEKSHTH KACSDYVFFG NGEYNVNGSK IPSFGTVPSL IAGDCPAIER CSPICEVAMD 360 DGSLCTRQPV SGRKRCDEHK GRKICNSNSE TTRYQTVPYV ASDSYANDAL GFDKKSSETF 420 IRGKVETGVA PHRPVFNDGC DTICGVEFGN GYFCTKQPVR GRVRCEEHKG LRVTSLLSGF 480 DAKSTSHDFD MDPRFNSHNW KYGRSSSSTT ICGAPTRNGS SCQRTVNGNG RCWQHSNYGC 540 SSISSSSNFS TKNSNYGDSS TSICGAPTRN GSFCQRKVKG NGRCWQH*

Sequence ? help Back to Top

Protein Sequence Length: 588 aa Download sequence Send to blast

MPMGATELAA VVTRLKREGH KRTKHDSQFS KWKVLIGPDD WVDYSIGKEG VARYRVENLP  60
KNSSSGLYEL AIYRSGSSSR ENTGKLDRYK VLVVYLGEAD NVRTRLQQYG RTGAHLGRSS  120
SGEKGCGYFE DIFSRGYSIV YRWAPMENKA DAQRTEAQLL NTFDYAWNKG SNGARRHDNI  180
LWKLDKGASN RTPPAIFSRK LLPFHQKQVG IKIKASKLLS QDSEFSKYSD GEGYNFLWQV  240
FKFSRSQPRL VFDRGGSNEN DTIICGVVLV DGSICRRPPL EGRKRCAEHK GKKTRGSSVS  300
LSTSEKSHTH KACSDYVFFG NGEYNVNGSK IPSFGTVPSL IAGDCPAIER CSPICEVAMD  360
DGSLCTRQPV SGRKRCDEHK GRKICNSNSE TTRYQTVPYV ASDSYANDAL GFDKKSSETF  420
IRGKVETGVA PHRPVFNDGC DTICGVEFGN GYFCTKQPVR GRVRCEEHKG LRVTSLLSGF  480
DAKSTSHDFD MDPRFNSHNW KYGRSSSSTT ICGAPTRNGS SCQRTVNGNG RCWQHSNYGC  540
SSISSSSNFS TKNSNYGDSS TSICGAPTRN GSFCQRKVKG NGRCWQH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007012886.2	0.0	PREDICTED: protein EFFECTOR OF TRANSCRIPTION 2
TrEMBL	A0A061GKU1	0.0	A0A061GKU1_THECC; Effector of transcription2, putative
STRING	EOY30505	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2954	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	1e-103	effector of transcription2

Link Out ? help Back to Top
Phytozome	Thecc1EG037691t1
Entrez Gene	18588425

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]