PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG037245t1
Common NameTCM_037245
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 317aa    MW: 34540.8 Da    PI: 6.5024
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG037245t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-151462148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      rg+W++eEd  l+ +++ +G+g +W + +++ g++R++k+c++rw++yl
  Thecc1EG037245t1 14 RGPWSPEEDATLKSYIETHGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                      89*********************************************97 PP
2Myb_DNA-binding45.91.3e-1469111246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       g +T+eEd ++  +  q+G++ W++Ia+ ++ gRt++++k++w++
  Thecc1EG037245t1  69 GGFTEEEDNIICTLYSQMGSR-WSLIASQLP-GRTDNDVKNYWNT 111
                       569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.962962IPR017930Myb domain
SuperFamilySSF466898.07E-2811109IPR009057Homeodomain-like
SMARTSM007172.0E-111364IPR001005SANT/Myb domain
PfamPF002497.1E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-251569IPR009057Homeodomain-like
CDDcd001671.40E-81662No hitNo description
PROSITE profilePS5129423.34763117IPR017930Myb domain
SMARTSM007174.2E-1467115IPR001005SANT/Myb domain
PfamPF002498.2E-1369111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-2570117IPR009057Homeodomain-like
CDDcd001673.95E-1171113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDATLKSYIE THGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPDIKHGG FTEEEDNIIC TLYSQMGSRW SLIASQLPGR TDNDVKNYWN TKLKKKLASG  120
KSCFNMSKTI NNDLVPAANT NISTQPGSAA ALQPCLPKAE PYNLDYSTSH SQISAPLPIL  180
SDVGYGFSIS SVQNLPLNPV VHFSRPEAVT HLSQSGATME NSLIVTSSQE GSSISDSTSL  240
AMESKPVSMP GNGYVDDTGN ILMDQFSYEF PYEFVNGIWS QEKAGEVVPS CYDSLADFPH  300
ADIKPQGLNQ SVANRY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007012221.20.0PREDICTED: myb-related protein Myb4
TrEMBLA0A061GIZ20.0A0A061GIZ2_THECC; Myb domain protein 84, putative
STRINGEOY298400.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2211545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.13e-76myb domain protein 84
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]