PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG037243t1 | ||||||||
Common Name | TCM_037243 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | C3H | ||||||||
Protein Properties | Length: 378aa MW: 41727.9 Da PI: 8.3421 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.3 | 2.6e-08 | 140 | 160 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G Ck Gd+C FaHg Thecc1EG037243t1 140 ACPDFRK-GNCKKGDSCEFAHG 160 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 6.437 | 87 | 124 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.4E-6 | 135 | 161 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.051 | 136 | 162 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-5 | 140 | 162 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-6 | 140 | 160 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 13 | 170 | 193 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.615 | 170 | 194 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MKGTAAPPRI RERCPKMMIG EPTRPNPTIK IPAWDPFNDP AANFPSVNYN CNAPNSPCPV 60 DYLTSLHRYL PSNDFESDSL SDDSDLPVDA FSCDHFRMYE FKVRRCARGR SHDWTECPYA 120 HPGEKARRRD PRKFHYSGTA CPDFRKGNCK KGDSCEFAHG VFECWLHPAR YRTQPCKDGT 180 SCKRRVCFFA HTPEQLRVLP QQSPRGNGAG SGDLDYVGSP IRHRLDFVSS PTSILASPPI 240 SPPSDSPPMS PSGSFNSASE LAASMRNLQL GKAKMTGACS WGLQMGSGFG SPRGSTLRSS 300 FCSSPSTPTR TPTRSGLGQF DLWECNAFEE EPAMERVESG RDLRARMYAK LSKENSLDRL 360 DPTGSGPDVG WVSELVK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021277275.1 | 0.0 | zinc finger CCCH domain-containing protein 23 | ||||
Swissprot | O82199 | 1e-122 | C3H20_ARATH; Zinc finger CCCH domain-containing protein 20 | ||||
TrEMBL | A0A061GRT5 | 0.0 | A0A061GRT5_THECC; Zinc finger C-x8-C-x5-C-x3-H type family protein, putative | ||||
STRING | EOY29839 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1249 | 27 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 1e-113 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG037243t1 |
Entrez Gene | 18588020 |
Publications ? help Back to Top | |||
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