PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG036972t1

Common Name

TCM_036972

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

FAR1

Protein Properties

Length: 670aa MW: 77402 Da PI: 6.7805

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG036972t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.2	2.8e-23	59	143	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn +Ake GF +r+s+s +++ +e +++++ Cs g++++++ + ++r+etrtgC a++++k+ ++++w++ ++el+HnH+++ Thecc1EG036972t1 59 DFYNVFAKEQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSEAN-----NPRPETRTGCPAMVVIKLVDSKRWRIVEVELDHNHQVS 143 6*******************999*************99888.....9********************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.8E-21	59	144	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.8E-28	266	358	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.47	552	588	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.5E-4	557	585	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.6E-6	563	590	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 670 aa Download sequence Send to blast
MEEVCLNSEP VFDEVDEYEG EGDCSVVGHD DETGAKLSKK EPLPPTVGLE FDSFDEAYDF 60 YNVFAKEQGF GIRVSNSWFR SKRKERYRAK LSCSSAGFKK KSEANNPRPE TRTGCPAMVV 120 IKLVDSKRWR IVEVELDHNH QVSPQIKRFY KSHKKMILAA SMAQPPAEPV TEIHTIKMYR 180 TAALDAGSNG YSNVSEREGI HPADHSNHLE LKEGDAYAVY NYFCRMKLTN LNFFYLMDFD 240 DDGSLKNVFW ADARSRTACG YFCDTIVIDT TCLANKYEIP LISFVGVNHH GQSVLLGCGF 300 LGHESVEYFV WIFRAWLKCM QGHAPQVIVT DQCKPLQIAV SEVFPKAHHC YCVWYIMHRV 360 PEKLGGLKGF EAIKRQLNKA VYNSLRIVEF ETSWAEVIKQ HGLGDNKWLQ TLYEDRKQWV 420 PVYLKDTFFA GTIPIQENES LNAFFDGYVH KHTSFKEFVD KYDLALHRKH LKEAVADMQS 480 RNSCFELKTR CNFEVQLSKV YTKEIFNKFQ SEVEGMYSCF NTRQVSVNGP IITYIVKERV 540 ETEGNEKEVR NYEVLFETSQ VDIRCICSLF NYKGYLCRHA LNVLNYNGVE EIPSRYILPR 600 WCKDFKYRHV DRGSCDIDVY NPVYWHNHLH KCAIPVVEGG AQSQEHYKIA LHELQELLNR 660 FNLVEDSLV*

Sequence ? help Back to Top

Protein Sequence Length: 670 aa Download sequence Send to blast

MEEVCLNSEP VFDEVDEYEG EGDCSVVGHD DETGAKLSKK EPLPPTVGLE FDSFDEAYDF  60
YNVFAKEQGF GIRVSNSWFR SKRKERYRAK LSCSSAGFKK KSEANNPRPE TRTGCPAMVV  120
IKLVDSKRWR IVEVELDHNH QVSPQIKRFY KSHKKMILAA SMAQPPAEPV TEIHTIKMYR  180
TAALDAGSNG YSNVSEREGI HPADHSNHLE LKEGDAYAVY NYFCRMKLTN LNFFYLMDFD  240
DDGSLKNVFW ADARSRTACG YFCDTIVIDT TCLANKYEIP LISFVGVNHH GQSVLLGCGF  300
LGHESVEYFV WIFRAWLKCM QGHAPQVIVT DQCKPLQIAV SEVFPKAHHC YCVWYIMHRV  360
PEKLGGLKGF EAIKRQLNKA VYNSLRIVEF ETSWAEVIKQ HGLGDNKWLQ TLYEDRKQWV  420
PVYLKDTFFA GTIPIQENES LNAFFDGYVH KHTSFKEFVD KYDLALHRKH LKEAVADMQS  480
RNSCFELKTR CNFEVQLSKV YTKEIFNKFQ SEVEGMYSCF NTRQVSVNGP IITYIVKERV  540
ETEGNEKEVR NYEVLFETSQ VDIRCICSLF NYKGYLCRHA LNVLNYNGVE EIPSRYILPR  600
WCKDFKYRHV DRGSCDIDVY NPVYWHNHLH KCAIPVVEGG AQSQEHYKIA LHELQELLNR  660
FNLVEDSLV*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007011821.2	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Refseq	XP_007011822.2	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Refseq	XP_017983144.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A061GQL8	0.0	A0A061GQL8_THECC; FAR1-related sequence 6 isoform 1
STRING	EOY29441	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	Thecc1EG036972t1
Entrez Gene	18587769

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]