PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG036913t1

Common Name

TCM_036913

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

WRKY

Protein Properties

Length: 310aa MW: 34253.6 Da PI: 7.4333

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG036913t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.8	3.1e-30	153	211	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rsaedp++++ tYegeHnh Thecc1EG036913t1 153 RDGYQWRKYGQKVTRDNPSPRAYFKCSFApSCPVKKKVQRSAEDPSILVATYEGEHNHA 211 7*************************99**************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	25.74	147	213	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	6.1E-29	147	211	IPR003657	WRKY domain
SuperFamily	SSF118290	4.71E-25	150	212	IPR003657	WRKY domain
SMART	SM00774	5.1E-34	152	212	IPR003657	WRKY domain
Pfam	PF03106	1.3E-24	154	210	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MESAWVDTNL DLNINIFNHR NKALKRESHG EVAESEVKVP LKQETGVLVE ELNRVSAENK 60 KLTEMLTVVC EHYNSLQNKF MELVSKNCEN EAATSKKRKA EFEDYTNMIG FNGNAESSCS 120 DEESSKRPKE SIKAKISRVY VRTNPSDSSL IVRDGYQWRK YGQKVTRDNP SPRAYFKCSF 180 APSCPVKKKV QRSAEDPSIL VATYEGEHNH AHSSPAELSL STSSIPDPCS APVSAPTKCS 240 APTVTLELMQ PGFMGDDAKK PVQQIDAPGI QQILAQQMAA SLTRDPNFTA ALAAAISGRV 300 VDQTRLEKW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-20	151	210	13	71	WRKY transcription factor 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007011727.2	0.0	PREDICTED: probable WRKY transcription factor 40
TrEMBL	A0A061GIH6	0.0	A0A061GIH6_THECC; WRKY transcription factor, putative
STRING	EOY29346	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2477	28	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80840.1	1e-85	WRKY DNA-binding protein 40

Link Out ? help Back to Top
Phytozome	Thecc1EG036913t1
Entrez Gene	18587712

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]