PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG036843t1 | ||||||||
Common Name | TCM_036843 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | B3 | ||||||||
Protein Properties | Length: 260aa MW: 29710.3 Da PI: 10.2648 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.2 | 2.3e-16 | 12 | 90 | 12 | 99 |
HTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 12 ksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++l++p +f+ ++ +g+ ++ +l++ +r+W+vkl ++++ +++GW+eF+++++L +gD++vF++ g++ f v+vf++ Thecc1EG036843t1 12 FHKQLSIPLSFFIKYlKGQ-NC-ERAVLRSCGSRTWSVKL--KGRR----FEDGWEEFARDHDLYVGDVLVFRHGGNMVF--DVMVFDT 90 4668***********7444.34.479**************..7777....9**********************9999999..8888875 PP | |||||||
2 | B3 | 64.7 | 1.4e-20 | 137 | 226 | 4 | 95 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +++++++lk + l +p+kfa+++g+ + +++l d++grsW +l+++k++g++++++GW++ + an+Lke D+v+++l+g+ ++++ +k Thecc1EG036843t1 137 ATLKPNNLKVSKLNIPRKFARSNGLTDRF-CEMVLVDQQGRSWIANLRHKKSDGQVYIGRGWRNLCIANNLKEEDSVLLELIGN-GKKPIFK 226 444777888888***********999765.5***************************************************95.4445555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.464 | 1 | 91 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-20 | 2 | 89 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.22E-19 | 2 | 91 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.07E-21 | 2 | 89 | No hit | No description |
SMART | SM01019 | 5.5E-20 | 4 | 91 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-12 | 12 | 88 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-24 | 127 | 225 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-22 | 130 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.81E-21 | 133 | 227 | No hit | No description |
PROSITE profile | PS50863 | 13.578 | 134 | 233 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.5E-22 | 135 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-19 | 136 | 226 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MPHFLKPLLP GFHKQLSIPL SFFIKYLKGQ NCERAVLRSC GSRTWSVKLK GRRFEDGWEE 60 FARDHDLYVG DVLVFRHGGN MVFDVMVFDT RSACQREYPL FAMKGKDQKK SSAKRFGKQL 120 EKCTSTSFKH EHPYFVATLK PNNLKVSKLN IPRKFARSNG LTDRFCEMVL VDQQGRSWIA 180 NLRHKKSDGQ VYIGRGWRNL CIANNLKEED SVLLELIGNG KKPIFKLEVA RDSSAKTKPN 240 HPDSKAGDWS CFCEGSSRC* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007011630.2 | 0.0 | PREDICTED: putative B3 domain-containing protein REM15 isoform X1 | ||||
TrEMBL | A0A061GQ63 | 0.0 | A0A061GQ63_THECC; DNA binding protein, putative isoform 1 | ||||
STRING | EOY29249 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00260.1 | 7e-49 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG036843t1 |
Entrez Gene | 18587648 |
Publications ? help Back to Top | |||
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