PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG036587t3 | ||||||||
Common Name | TCM_036587 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | NAC | ||||||||
Protein Properties | Length: 525aa MW: 58022.4 Da PI: 4.3733 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 109.5 | 3.7e-34 | 1 | 89 | 41 | 128 |
NAM 41 kvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k++P++Lp + +k+++++w+fFs+rd+ky++g r+nrat++gyWkatgkd+++++ ++++vg+kktLvfy grap+g+++dWvmhey+l Thecc1EG036587t3 1 KWDPEELPaQsILKSGDRQWFFFSPRDRKYPNGARSNRATRQGYWKATGKDRTITC-NSRVVGVKKTLVFYGGRAPNGVRSDWVMHEYTL 89 579****95346778999**************************************.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 41.076 | 1 | 112 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 9.29E-40 | 2 | 112 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.2E-15 | 19 | 89 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070301 | Biological Process | cellular response to hydrogen peroxide | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 525 aa Download sequence Send to blast |
KWDPEELPAQ SILKSGDRQW FFFSPRDRKY PNGARSNRAT RQGYWKATGK DRTITCNSRV 60 VGVKKTLVFY GGRAPNGVRS DWVMHEYTLD EEELKRCQNM KDYYALYKVY KKSGPGPKNG 120 EQYGAPFKEE DWVDEEYVSN PITVTPVKLP NEAIPDDNVN ANVQVQSALN EIEEFMRQLA 180 DEPALPQPQA QPGHALPQVV SEEETQSTLL DPSPRGVIFH EPIGVVLEQA SFEFSQSPTS 240 QLHEAPEVTS VADHFEQVPQ ICEEGFLEID DLIGPETLTS NVGKPAENVQ FNELDGLSEF 300 DLFHDAAMFL QDMGPIDQGA VPFSYTDNMI NQPQLNAFGA NQQLQPQLNA FGDNMLNQVD 360 YQLQFQSVGD ELDQQIQLDQ IHEPLWTHDQ SSDVFAPSGS NLGNAAPTSG LIYNGNNQDQ 420 GDKNGGGASM FSSALWSFVE SIPTTPASAS ETPLVNRALE RMSSFSRLRL NARNTAVSAV 480 DGAATARRIG GNRGIFFISI LGALCAILWF FTGTVRILGR SISS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-32 | 1 | 89 | 54 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00179 | DAP | Transfer from AT1G34190 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007020196.2 | 0.0 | PREDICTED: NAC domain-containing protein 17 isoform X2 | ||||
TrEMBL | A0A061FJA0 | 0.0 | A0A061FJA0_THECC; NAC domain protein, IPR003441, putative isoform 3 (Fragment) | ||||
STRING | EOY17421 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 1e-122 | NAC domain containing protein 17 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG036587t3 |
Entrez Gene | 18593090 |
Publications ? help Back to Top | |||
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