PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG036587t3
Common NameTCM_036587
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 525aa    MW: 58022.4 Da    PI: 4.3733
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG036587t3genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.53.7e-3418941128
               NAM  41 kvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       k++P++Lp +  +k+++++w+fFs+rd+ky++g r+nrat++gyWkatgkd+++++ ++++vg+kktLvfy grap+g+++dWvmhey+l
  Thecc1EG036587t3   1 KWDPEELPaQsILKSGDRQWFFFSPRDRKYPNGARSNRATRQGYWKATGKDRTITC-NSRVVGVKKTLVFYGGRAPNGVRSDWVMHEYTL 89 
                       579****95346778999**************************************.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100541.0761112IPR003441NAC domain
SuperFamilySSF1019419.29E-402112IPR003441NAC domain
PfamPF023655.2E-151989IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
KWDPEELPAQ SILKSGDRQW FFFSPRDRKY PNGARSNRAT RQGYWKATGK DRTITCNSRV  60
VGVKKTLVFY GGRAPNGVRS DWVMHEYTLD EEELKRCQNM KDYYALYKVY KKSGPGPKNG  120
EQYGAPFKEE DWVDEEYVSN PITVTPVKLP NEAIPDDNVN ANVQVQSALN EIEEFMRQLA  180
DEPALPQPQA QPGHALPQVV SEEETQSTLL DPSPRGVIFH EPIGVVLEQA SFEFSQSPTS  240
QLHEAPEVTS VADHFEQVPQ ICEEGFLEID DLIGPETLTS NVGKPAENVQ FNELDGLSEF  300
DLFHDAAMFL QDMGPIDQGA VPFSYTDNMI NQPQLNAFGA NQQLQPQLNA FGDNMLNQVD  360
YQLQFQSVGD ELDQQIQLDQ IHEPLWTHDQ SSDVFAPSGS NLGNAAPTSG LIYNGNNQDQ  420
GDKNGGGASM FSSALWSFVE SIPTTPASAS ETPLVNRALE RMSSFSRLRL NARNTAVSAV  480
DGAATARRIG GNRGIFFISI LGALCAILWF FTGTVRILGR SISS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-3218954140Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007020196.20.0PREDICTED: NAC domain-containing protein 17 isoform X2
TrEMBLA0A061FJA00.0A0A061FJA0_THECC; NAC domain protein, IPR003441, putative isoform 3 (Fragment)
STRINGEOY174210.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-122NAC domain containing protein 17
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]