PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG036255t1 | ||||||||
Common Name | TCM_036255 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | MYB_related | ||||||||
Protein Properties | Length: 188aa MW: 20709.6 Da PI: 10.2269 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.6 | 1.4e-13 | 48 | 91 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT++E++ ++ + + +G g Wk+I++ + k+Rt+ q+ s+ qk+ Thecc1EG036255t1 48 WTEQEHKAFLMGLEVYGQGKWKKISENLVKTRTPSQIASHAQKF 91 ******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.33 | 40 | 96 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.11E-16 | 42 | 97 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.1E-14 | 43 | 92 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 5.9E-9 | 44 | 94 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-10 | 47 | 87 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.93E-10 | 48 | 91 | No hit | No description |
Pfam | PF00249 | 2.7E-10 | 48 | 90 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MVRQVTQTRR CSICRLQGHY STTCQLKTKD HSMPVSSKLL ERKQGKFWTE QEHKAFLMGL 60 EVYGQGKWKK ISENLVKTRT PSQIASHAQK FNLWLKAVAN DPEKKHNFSI FQVQQTPISQ 120 FSSSTANGGA SETTSQIPIF QFSSSIASGG VSETTSQVAH PLANTIAMNP CLCLRMSPAG 180 HATPHSC* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007019862.1 | 1e-138 | PREDICTED: transcription factor MYB1R1 | ||||
TrEMBL | A0A061FK84 | 1e-137 | A0A061FK84_THECC; Uncharacterized protein | ||||
STRING | EOY17087 | 1e-138 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 3e-20 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG036255t1 |
Entrez Gene | 18592876 |
Publications ? help Back to Top | |||
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