PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG035571t1

Common Name

TCM_035571

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Trihelix

Protein Properties

Length: 570aa MW: 63889.3 Da PI: 6.8676

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG035571t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	91.2	1.1e-28	46	130	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe laL+++r++m+ +r+++lk+plWeevs+k++e g++rs+k+Ckek+en+ k++k++k+g+ ++ + +t+++fdqlea Thecc1EG035571t1 46 RWPRQESLALLKIRSDMDAVFRDSSLKGPLWEEVSRKLAELGYHRSAKKCKEKFENVFKYHKRTKDGRTGK--ADGKTYRFFDQLEA 130 8******************************************************************96..66678*****85 PP
2	trihelix	103.9	1.1e-32	387	472	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r++++ +++++ k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr se+s+tcpyf+ql+a Thecc1EG035571t1 387 RWPKAEVQALIRLRTNLNVKYQENGPKAPLWEEISAGMRKLGYSRSAKRCKEKWENINKYFKKVKESSKKR-SEDSKTCPYFHQLDA 472 8*******************************************************************8.89999******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.03	43	105	IPR001005	SANT/Myb domain
CDD	cd12203	6.12E-23	45	110	No hit	No description
Pfam	PF13837	8.2E-19	45	131	No hit	No description
PROSITE profile	PS50090	7.015	45	103	IPR017877	Myb-like domain
SMART	SM00717	0.0018	384	446	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	7.468	386	444	IPR017877	Myb-like domain
CDD	cd12203	8.77E-26	386	451	No hit	No description
Pfam	PF13837	3.1E-22	387	473	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.1E-4	387	443	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 570 aa Download sequence Send to blast
MAESSADASA APGIHEGSEI GMVGSNSGEE DKGRVDEGDR SFGGNRWPRQ ESLALLKIRS 60 DMDAVFRDSS LKGPLWEEVS RKLAELGYHR SAKKCKEKFE NVFKYHKRTK DGRTGKADGK 120 TYRFFDQLEA LENLHSLQSQ SPPKPQTPTP TSAAMPWTNP PTASNIHVPS TTINPTNVPQ 180 TNATPSINPT ISTQAVPIHS IGPYSNSIPS SFHNISSNLF STSTSSSTAS DDDSDQGSSK 240 KKRKWKEFFW RLTKEVIEKQ EELQNKFLRT IEKCEQERTA REEAWRIQEM ARINREHEIL 300 VQERSTAAAK DAAVIAFLQK ILGQQPNTVQ VQPQENPQPT PPPPTAPLSL PPPLHQPQPQ 360 PPTPALNFDT SKMTNGAYNV VLSSPSRWPK AEVQALIRLR TNLNVKYQEN GPKAPLWEEI 420 SAGMRKLGYS RSAKRCKEKW ENINKYFKKV KESSKKRSED SKTCPYFHQL DAIYKEKISK 480 NENSVGSSGY GVKPESKMVP LMVQPEQQWP PQQQEISQQA EAMMEEAERE NVDQIQEDEE 540 DIGESEGEEY ERNAFELVAN KTAPIGTAE*

Sequence ? help Back to Top

Protein Sequence Length: 570 aa Download sequence Send to blast

MAESSADASA APGIHEGSEI GMVGSNSGEE DKGRVDEGDR SFGGNRWPRQ ESLALLKIRS  60
DMDAVFRDSS LKGPLWEEVS RKLAELGYHR SAKKCKEKFE NVFKYHKRTK DGRTGKADGK  120
TYRFFDQLEA LENLHSLQSQ SPPKPQTPTP TSAAMPWTNP PTASNIHVPS TTINPTNVPQ  180
TNATPSINPT ISTQAVPIHS IGPYSNSIPS SFHNISSNLF STSTSSSTAS DDDSDQGSSK  240
KKRKWKEFFW RLTKEVIEKQ EELQNKFLRT IEKCEQERTA REEAWRIQEM ARINREHEIL  300
VQERSTAAAK DAAVIAFLQK ILGQQPNTVQ VQPQENPQPT PPPPTAPLSL PPPLHQPQPQ  360
PPTPALNFDT SKMTNGAYNV VLSSPSRWPK AEVQALIRLR TNLNVKYQEN GPKAPLWEEI  420
SAGMRKLGYS RSAKRCKEKW ENINKYFKKV KESSKKRSED SKTCPYFHQL DAIYKEKISK  480
NENSVGSSGY GVKPESKMVP LMVQPEQQWP PQQQEISQQA EAMMEEAERE NVDQIQEDEE  540
DIGESEGEEY ERNAFELVAN KTAPIGTAE*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ013092	2e-54	JQ013092.1 Gossypium hirsutum trihelix transcription factor (GT7) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017985286.1	0.0	PREDICTED: trihelix transcription factor GT-2
Swissprot	Q39117	1e-146	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A061FJ93	0.0	A0A061FJ93_THECC; Duplicated homeodomain-like superfamily protein, putative
STRING	EOY16712	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4849	25	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	1e-117	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG035571t1
Entrez Gene	18592609

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]