PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG035562t1

Common Name

TCM_035562

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Trihelix

Protein Properties

Length: 447aa MW: 51349.1 Da PI: 6.6787

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG035562t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	83	3.9e-26	121	217	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 +Wt+++v++Li+a+++++e+ ++ +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++++++ ++ Thecc1EG035562t1 121 KWTDKMVRLLITAVSYIGEDAAGDCgggmrrkfavlQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPAL 213 7**************9999988788888899999********************************************56999988888 PP trihelix 82 fdql 85 +d + Thecc1EG035562t1 214 LDVI 217 7765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.0E-24	119	244	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MEGNLSQGGM ISGGGSFGGL DVQGSMRVHH HAQHPHNIHQ HHHSNPRQGA SIHPSIHEGF 60 PLTMGTMQNC DQTIAMTDYN KGERRKSSVS DEDEPSFTEE GVDGHNDGTK GKKGSPWQRV 120 KWTDKMVRLL ITAVSYIGED AAGDCGGGMR RKFAVLQKKG KWKSVSKVMA ERGYHVSPQQ 180 CEDKFNDLNK RYKKLNDMLG RGTSCQVVEN PALLDVIDYL TEKEKDDVRK ILSSKHLFYE 240 EMCSYHNGNR LHLPHDPQLQ RSLQLALRSR DDHENDDARR HQHDDLDDDD HDMETDDHDE 300 FEENHALHGD SRGMYGVLGG SAKRSRQGQV HEDACFQNSL NSQDCNKSSF SYSPINQADM 360 NQVLPDNTRA AWLQKQWIES RSLQLEEQKL QIQVEMLELE KQRFKWQRFS KKRDRELEKM 420 RMENERMKLE NERMALELKR KEFAAD*

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MEGNLSQGGM ISGGGSFGGL DVQGSMRVHH HAQHPHNIHQ HHHSNPRQGA SIHPSIHEGF  60
PLTMGTMQNC DQTIAMTDYN KGERRKSSVS DEDEPSFTEE GVDGHNDGTK GKKGSPWQRV  120
KWTDKMVRLL ITAVSYIGED AAGDCGGGMR RKFAVLQKKG KWKSVSKVMA ERGYHVSPQQ  180
CEDKFNDLNK RYKKLNDMLG RGTSCQVVEN PALLDVIDYL TEKEKDDVRK ILSSKHLFYE  240
EMCSYHNGNR LHLPHDPQLQ RSLQLALRSR DDHENDDARR HQHDDLDDDD HDMETDDHDE  300
FEENHALHGD SRGMYGVLGG SAKRSRQGQV HEDACFQNSL NSQDCNKSSF SYSPINQADM  360
NQVLPDNTRA AWLQKQWIES RSLQLEEQKL QIQVEMLELE KQRFKWQRFS KKRDRELEKM  420
RMENERMKLE NERMALELKR KEFAAD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007019480.2	0.0	PREDICTED: uncharacterized protein LOC18592603
TrEMBL	A0A061FHC2	0.0	A0A061FHC2_THECC; Sequence-specific DNA binding transcription factors
STRING	EOY16705	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5042	27	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-170	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Thecc1EG035562t1
Entrez Gene	18592603

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]